Query= MSMg01no045_b11.b1 MSMg01no045_b11.b1 CHROMAT_FILE:
MSMg01no045_b11.b1 PHD_FILE: MSMg01no045_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:57 2005
(653 letters)
>mm_chr16_41803028_41804082
Length = 1055
Score = 990 bits (512), Expect = 0.0
Identities = 524/528 (99%), Gaps = 2/528 (0%)
Strand = Plus / Minus
Query: 6 gaattc-acgtaagcgcatgatctctttttgattg-aatcattttgatggtcctttgtat 63
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 528 gaattcaacgtaagcgcatgatctctttttgattgtaatcattttgatggtcctttgtat 469
Query: 64 gtacatgtgtatgtgtacataaacgtatgcatatacaaattattaaagtatgcaaaatta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtacatgtgtatgtgtacataaacgtatgcatatacaaattattaaagtatgcaaaatta 409
Query: 124 tgaacatttttatcttacatgcttacaaatatgcatatgcatgcagaaaaggaagcaatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgaacatttttatcttacatgcttacaaatatgcatatgcatgcagaaaaggaagcaatt 349
Query: 184 tttaaagagaaatattggacgggcaatataattttggactaatcttctaaactggggaag 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 348 tttaaagagaaatattggacgggcaatataattttggactaatcttcaaaactggggaag 289
Query: 244 cattagaaagaataaaaaagatggggtggaaactatggaggagaaaataggaaatgatac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cattagaaagaataaaaaagatggggtggaaactatggaggagaaaataggaaatgatac 229
Query: 304 atgagacaggtaggtggtagatatgtcttcattactgttcaattattgtgaagatatacc 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 228 atgagacaggtaggtggtagatatgtcttcattactgttcaattattgtgaagatatatc 169
Query: 364 atgagcaaagcaacctttagaagaaagcatttgatgatgtcttgctcataggttcagagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atgagcaaagcaacctttagaagaaagcatttgatgatgtcttgctcataggttcagagg 109
Query: 424 gttagtccatgactatgaaagtgtgcacagcagtttcaagccagcaggcatggtgtttaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gttagtccatgactatgaaagtgtgcacagcagtttcaagccagcaggcatggtgtttaa 49
Query: 484 gcaatagctgagacctcatatatgctctgcaagttgcaggaagagagt 531
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 gcaatagctgagacctcatatatgctctgcaagttgcaggaagagagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1055
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1045
Effective search space: 671935
Effective search space used: 671935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_b11.g1 MSMg01no045_b11.g1 CHROMAT_FILE:
MSMg01no045_b11.g1 PHD_FILE: MSMg01no045_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:57 2005
(615 letters)
>mm_chr16_41653268_41654283
Length = 1016
Score = 1152 bits (596), Expect = 0.0
Identities = 611/616 (99%), Gaps = 1/616 (0%)
Strand = Plus / Plus
Query: 1 tttcttggaggca-ttaagaacaaaggatagtcagtaaaggccaggctgacagttggcct 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcttggaggcaattaagaacaaaggatagtcagtaaaggccaggctgacagttggcct 260
Query: 60 ggcagaagcacaagcttgctgtgtgagggatggcaatgtggggacagactgtggacttgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagaagcacaagcttgctgtgtgagggatggcaatgtggggacagactgtggacttgg 320
Query: 120 agaaggtcagcctggaagaacttcagagatcatctaacctctttcttctggtggggaggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaggtcagcctggaagaacttcagagatcatctaacctctttcttctggtggggaggc 380
Query: 180 tcaacagagcatacgtgtctgcatctgtgacttgatgtggaatcttcagatgagtaattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaacagagcatacgtgtctgcatctgtgacttgatgtggaatcttcagatgagtaattt 440
Query: 240 aatttctgggtgcctgatccacagaatctacgaataacccccaaattcccattagtgtag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatttctgggtgcctgatccacagaatctacgaataacccccaaattcccattagtgtag 500
Query: 300 tagatgctatccaaaggacttataggacttggcatcctttgcctctaacagagataagag 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatgctatccaaaggaattataggacttggcatcctttgcctctaacagagataagag 560
Query: 360 ggagtgctttatttctgactttacagaggacatttgtattgacaggttaaatgcagactc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgagtgctttatttctgactttacagaggacatttgtattgacaggttaaatgcagactt 620
Query: 420 cactgaactcttaagaaaaatagattctcaatctagtcccctacatgtgaaccagtttct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 cactgaactcttaagaaaaatagattctcaatctagtcccctacatgtgaacccgtttct 680
Query: 480 ctactactgattaaaattagaatgctcaagctatatataccaccttcctttctcacttta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctactactgattaaaattagaatgctcaagctatatataccaccttcctttctcacttta 740
Query: 540 gcatcacaaaggatgtgctggactctgatttatcattccaaccttgctcttaaaagctac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcatcacaaaggatgtgctggactctgatttatcattccaaccttgctcttaaaagctac 800
Query: 600 ccaaacatcctgtggc 615
||||||||||||||||
Sbjct: 801 ccaaacatcctgtggc 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
