BAC Information

Click to search

BAC

Clone NameMSMg01-045D23
Chromosome16 (Build37)
Map Location 18,936,880 - 18,937,474
singlet/doubletsinglet
Overlap geneHira
Upstream geneVpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40
Downstream geneIgl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045D23.T7 (MSMg01no045_d23.b1)MSMg01-045D23.TJ (MSMg01no045_d23.g1)
ACCAG275927AG275928
length674674
length of high quality
(start - end)		559 (21 - 579)604 (54 - 657)
definitionCHROMAT_FILE: MSMg01no045_d23.b1 PHD_FILE: MSMg01no045_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:09 2005CHROMAT_FILE: MSMg01no045_d23.g1 PHD_FILE: MSMg01no045_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCCTATATTCCAGAAATCCGCGGAATTCCATAAATTCATCCTTTTTAA
TAGCTGAGTAGTACTCCATTGTGTATATGTACCACATTTTTTGTATCCAT
TCATCTGTTGAGGGGCATCTGGGTTCTTTCCAGATTCTGGCTATTATAAA
TAAGGCTGCTATGAACATAGTGGAGCATGTGTCTTTCTTACAAGTTGGAA
TATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCTCCAGTAGT
ACTATGTCCAGTTTTCTGAGGAACCGCCAGAATGATTTCCAGAGTGGTGG
TACAAGCTTGCAATCCCACCAACAATGGAAGAGTGTTCCTCTTTCTCCAC
ATCCTCACCAGCATCTACTGTCACCTGAATTTTTGATCTTACCCATTCTG
ACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGAT
GATTAAGGATTTTGAACATTCTTTCAGGTGCTTCTCAGCCATTCGGTATT
CCTCAGTTGAGAATTCTTTGTTTAGTTCTGAGCTCCATTTTTAATGGGGT
TATTTGATTTTCTGGAATCCACCTTCTGATAAGTGGATATTAGCCCAGAA
ACTTAGAATACCTAAGATATAAGATGCAATTTATGATACACATGAAACTC
ATGAAGAAGGAAGACAAAAGTGTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTGGATTGAATGAGCTAAATGCTGATTGGAGAGAGTGGTGAAGCACTA
TAGCTGGAAAGACCTTGTGCTCCTTGAGGCCTGTCATGAGTGGCTTATTG
GTTCTAATGGCCAATCATCATTTTCTTCAGTAGTATACTTGCTGACTCAG
AAGCTGAGGCCAACTTGAATTGGCAGTTTTATTGAACATGAGGGTTGGTC
TCTCCTCAGTAGCTTTGTCCCCAAGGTCTCGCATGATCTTCCAGCTGTAC
ACATACAAGAAGGGTATGATTAAGCTTCCGCATTTATGGATGAGCATTCA
GCATTCACTTTTACTCAGTATTTTGACCAATTATACTTCCTGCCGCCCAA
TACAAGAAGAGTCTTTGATAACGCTGGCAGCAGCACTGATCTATGAACAT
AAGTGTAAGTATTTAGAAGGCAGTTTGGTAGGCACATCATATCCATTTAG
CTTCTAGAGTGGGGTTGATGATCTCACAGGCTTTTGCTGAGGTTTACAGT
ACCCATCAGGAGAGTTTCTTCTTGGTGAGTGGGCCTTAGTTCTGATAAGA
ACCGTGACAGGGGTTCTCTCACTGCCTCCCCTATGGATAGCAGCAGTTTG
TGTGGTGGCAGCTAGGCAGTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_d23.g1 MSMg01no045_d23.g1 CHROMAT_FILE:
MSMg01no045_d23.g1 PHD_FILE: MSMg01no045_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:09 2005
         (604 letters)



>mm_chr16_18936680_18937683
          Length = 1004

 Score = 1060 bits (548), Expect = 0.0
 Identities = 586/604 (97%), Gaps = 9/604 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggattgaatgagctaaatgctgattggagagagtggtgaagcactatagctggaaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggattgaatgagctaaatgctgattggagagagtggtgaagcactatagctggaaagac 260

                                                                       
Query: 61  cttgtgctccttgaggcctgtcatgagtggcttattggttctaatggccaatcatcattt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 cttgtgctccttgaggcctgtcatgagtggcttattggttctaatggccaatcaccattt 320

                                                                       
Query: 121 tcttcagtagtatacttgctgactcagaagctgaggccaacttgaattggcagttttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcagtagtatacttgctgactcagaagctgaggccaacttgaattggcagttttatt 380

                                                                       
Query: 181 gaacatgagggttggtctctcctcagtagctttgtccccaaggtctcgcatgatcttcca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gaacatgagggttggtctctcctcagtagctttgtccccaaggtctcgcacgatcttcca 440

                                                                       
Query: 241 gctgtacacatacaagaagggtatgattaagcttccgcatttatggatgagcattcagca 300
           |||||||||||||||||||||||||||||         ||||||||||||||||||| ||
Sbjct: 441 gctgtacacatacaagaagggtatgatta---------atttatggatgagcattcaaca 491

                                                                       
Query: 301 ttcacttttactcagtattttgaccaattatacttcctgccgcccaatacaagaagagtc 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 492 ttcacttttactcagtattttgaccaattatacttcctgctgcccaatacaagaagagtc 551

                                                                       
Query: 361 tttgataacgctggcagcagcactgatctatgaacataagtgtaagtatttagaaggcag 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tttgataaggctggcagcagcactgatctatgaacataagtgtaagtatttagaaggcag 611

                                                                       
Query: 421 tttggtaggcacatcatatccatttagcttctagagtggggttgatgatctcacaggctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttggtaggcacatcatatccatttagcttctagagtggggttgatgatctcacaggctt 671

                                                                       
Query: 481 ttgctgaggtttacagtacccatcaggagagtttcttcttggtgagtgggccttagttct 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 672 ttgctgaggtttacagtacccatcaggagagtttcttcctggtgagtgggcctcagttct 731

                                                                       
Query: 541 gataagaaccgtgacaggggttctctcactgcctcccctatggatagcagcagtttgtgt 600
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 732 gataagaaccgtgacaggggttctcccaccgcctcccctatggatagcagcagtttgtgt 791

               
Query: 601 ggtg 604
           ||||
Sbjct: 792 ggtg 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |