BAC Information

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BAC

Clone NameMSMg01-046C21
Chromosome16 (Build37)
Map Location 73,663,489 - 73,663,892
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046C21.T7 (MSMg01no046_c21.b1)MSMg01-046C21.TJ (MSMg01no046_c21.g1)
ACCAG276621AG276622
length691692
length of high quality
(start - end)
589 (44 - 632)617 (74 - 690)
definitionCHROMAT_FILE: MSMg01no046_c21.b1 PHD_FILE: MSMg01no046_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:17 2005CHROMAT_FILE: MSMg01no046_c21.g1 PHD_FILE: MSMg01no046_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGGGCCCCATTTTTTATTGGGGTTATATTGATTTT
CTGGAGTTCACCTTCTAGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATA
AGGTTGCATTTGTCAATTCTCAATCTTTTTTTTTTTTTTTTTTTTGGTTT
TCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTG
TAGACCAGGCTGGCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCGA
GTGCTGGGATCAAAGGCGTGTGCCACCACACCCTGCGTCAATTCTCAATC
TTATAGCACAAGCCATTGCTGTTCTATTCAGGAATTGTTCCCCTGTGCCC
ATATCTTCGAGGCTTTTCCCTCTTTCTCCTCTATAAGTTTAACTGTCTCT
GGTTTTATGTGGAGCTACTTGATCCTTATCGATTTGACCTTAGTACAAGG
AGATAGGAATGGATCAATTTCCATTCTTCTACATGATAATCACCAGTTGT
GCCAGCACCATTTGTTGAAAATGCTGTCTCTTTTCCACTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATTAATTGATAATTTTAGAGGATTAT
TGTATGTAGTTCAGAAGAGATATACTTCTATTTTAATTCCCATTACTGAC
TTTAGGTTCAATAATAGGAACATCATTGCTTTGATAAGTCGATTGTAAAT
TTTCTTCTTTACTTAAAATATGTATTAGATTGGTATTACACCTTTCCCAG
ATGTTTAAATTAAGTTCACCAAGAAGCCATTTAAAGATGTCGCCGTCTTT
CTGGAAGGTTTCTCATAACTAACTTAACTTTACACACATATTAGTAAAAC
TTTTCAATTCATAAAGTATTCATTTTGGTATGTTGAATATTCAAATAATG
ATTTCACTTTGCCCAATGTTTTGCCATGTTTTATGTTAATTGAATTTTCC
TCATTGTTTTGATGTGTTTGATTCAGATAGATACTACAAGATTTCTTAGT
GGCTCCTGCAGAACCGCCTTATGAATCTTTCATATCTCAGAGTTCATTCA
GTGCTTAAGCTGTATCACTTCCTTTACAATGTATGAAACTCATAGCCAAT
CAGTCCTCTGACCTTATCCTTCTCACTTTTCTGCATAATCCCCCTACATG
TTACAGTCCATAAACTGCACATACAAAGTTTCATTTCTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_c21.g1 MSMg01no046_c21.g1 CHROMAT_FILE:
MSMg01no046_c21.g1 PHD_FILE: MSMg01no046_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:17 2005
         (617 letters)



>mm_chr16_73663081_73664092
          Length = 1012

 Score =  714 bits (369), Expect = 0.0
 Identities = 397/409 (97%), Gaps = 5/409 (1%)
 Strand = Plus / Plus

                                                                       
Query: 209 taaagatgtcgccgtctttctggaaggtttctcataactaacttaactttacacacatat 268
           ||||||||| ||| |||||||||||||||||||||||     ||||||||||||||||||
Sbjct: 409 taaagatgtagccatctttctggaaggtttctcataa-----ttaactttacacacatat 463

                                                                       
Query: 269 tagtaaaacttttcaattcataaagtattcattttggtatgttgaatattcaaataatga 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tagtaaaacttttcaattcataaagtattcattttggtatgttgaatattcaaataatga 523

                                                                       
Query: 329 tttcactttgcccaatgttttgccatgttttatgttaattgaattttcctcattgttttg 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tttcactttgcccaatgttttgccatgttttatgttaattgaattttcctcattgttttg 583

                                                                       
Query: 389 atgtgtttgattcagatagatactacaagatttcttagtggctcctgcagaaccgcctta 448
           ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 584 atgtgtttgattcagatagattctacaagatttcttattggctcctgcagaaccgcctta 643

                                                                       
Query: 449 tgaatctttcatatctcagagttcattcagtgcttaagctgtatcacttcctttacaatg 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgaatctttcatatctcagagttcattcagtgcttaagctgtatcacttcctttacaatg 703

                                                                       
Query: 509 tatgaaactcatagccaatcagtcctctgaccttatccttctcacttttctgcataatcc 568
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 704 tatgaaactcatagccaatcagtcctctgaccttatccttctcgcttttctgcataattc 763

                                                            
Query: 569 ccctacatgttacagtccataaactgcacatacaaagtttcatttcttg 617
           ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 764 ccctacatgttacagtccacaaactgcacatacaaagtttcatttcttg 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1012
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1002
Effective search space:   608214
Effective search space used:   608214
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)