BAC Information

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BAC

Clone NameMSMg01-047A13
Chromosome16 (Build37)
Map Location 83,629,356 - 83,629,940
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545172, LOC100039572
Downstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047A13.T7 (MSMg01no047_a13.b1)MSMg01-047A13.TJ (MSMg01no047_a13.g1)
ACCAG277260AG277261
length674677
length of high quality
(start - end)
477 (45 - 521)585 (77 - 661)
definitionCHROMAT_FILE: MSMg01no047_a13.b1 PHD_FILE: MSMg01no047_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:19 2005CHROMAT_FILE: MSMg01no047_a13.g1 PHD_FILE: MSMg01no047_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGGTTCTC
TAGAATCTAACTTCATGTGTTCTTTGTATATATTGGATATTAGCTCTCTA
TCAGATGTAGGATTGGTAAAGATCTTTTTCTCATGGAAGGAGTTACAGAG
ACAAATTGTGAAGCAGAGACTGAAGGAATGACCATCCAGAGACTGTCCCA
CCTGGGGATCTATCCCATATACAACCTTCAAACCCAGACACTATTTTGGA
TGCCAGGAAGTGACTGCTGACAGGAGCCTGATACAGCTGTCTCCTGAGAG
GCTTTTCCAGTGTCTGACAAATACAGAAGTGAATGCTCACAGCCATCCAT
TGGACTGAGCAGAGTCCTCAATGAAGGAGCTAGAGAAAGGATCCAAGGAG
CTAAAGGTGTTTGCAGCCCCATAGGAAGAACAACAATATGAACTAACCAG
TATCTCCAGAGCTCCCAGGGACTAAACCACCAAACAAAAAATTCTCATTG
TGAGACTGCTGGCTCTTGCTGCATATGCAGCAGAGGATGACCCAGTTGGT
CATCAGTGCTAGGAAAGGCCCTTGGTCCTGTTAAGGTTCTATGCCCCAGT
ACAGGTAAATGCCAGGGTCAACAG
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCAGGGTACAGAAATATACAA
AGAAAAAGATGTGTTTCTGCCCAATTACTATGCCCACTTATCTCACAAAA
TACAGAACCACTTTAAGGCACTTCTCACTTCTTAAGAGAGTTAAAATAGG
ATTCTTGTAGTCAGTTTCCAACACAAATAAGACATAGGGCATCCATATAT
CCCAATAGATGTGTTTAATTAGAAAACATTAAACTTAGGCATTAATTTAA
TTTAATAAGTATACATGCGAAACTAGAAATGATCTTTTCGGTTTCAGTTG
CTTTGTCTGCAACTATTGGACTACTCAGAAAAAAACCCACACATTCTCAG
TGAGGAGAGAGGAAAATCAGTATCATTTAATAGAAATATTTAACGGAATG
ATAATATGAAAATTGTTTACAAGAGGACTGCAAGGACTTTATAATTGTAA
ATATATAAAACGTTTTTCAATTATATCCATGTAGGTTTCATTCTCGATCA
AGCAATTTCTGTGAAACGACATTTTATATTAGTTTTTATTATTTAATTTT
TCTTATTACTATCTCACTGTCATCATCATCATTTGTTAGCTCTTTATTGG
ATATATATATACATACATATATATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_a13.g1 MSMg01no047_a13.g1 CHROMAT_FILE:
MSMg01no047_a13.g1 PHD_FILE: MSMg01no047_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:19 2005
         (585 letters)



>mm_chr16_83629156_83630140
          Length = 985

 Score = 1100 bits (569), Expect = 0.0
 Identities = 581/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcagggtacagaaatatacaaagaaaaagatgtgtttctgcccaattactatgccca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tctgcagggtacagaaatatacaaagaaaaagatgcgtttctgcccaattactatgccca 260

                                                                       
Query: 61  cttatctcacaaaatacagaaccactttaaggcacttctcacttcttaagagagttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatctcacaaaatacagaaccactttaaggcacttctcacttcttaagagagttaaaa 320

                                                                       
Query: 121 taggattcttgtagtcagtttccaacacaaataagacatagggcatccatatatcccaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggattcttgtagtcagtttccaacacaaataagacatagggcatccatatatcccaat 380

                                                                       
Query: 181 agatgtgtttaattagaaaacattaaacttaggcattaatttaatttaataagtatacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgtgtttaattagaaaacattaaacttaggcattaatttaatttaataagtatacat 440

                                                                       
Query: 241 gcgaaactagaaatgatcttttcggtttcagttgctttgtctgcaactattggactactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgaaactagaaatgatcttttcggtttcagttgctttgtctgcaactattggactactc 500

                                                                       
Query: 301 agaaaaaaacccacacattctcagtgaggagagaggaaaatcagtatcatttaatagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaaaaacccacacattctcagtgaggagagaggaaaatcagtatcatttaatagaaa 560

                                                                       
Query: 361 tatttaacggaatgataatatgaaaattgtttacaagaggactgcaaggactttataatt 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tatttaacggaatgataatatgaaaattgtttacaagagaactgcaaggactttataatt 620

                                                                       
Query: 421 gtaaatatataaaacgtttttcaattatatccatgtaggtttcattctcgatcaagcaat 480
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 gtaaatatacaaaacgtttttcaattatatccatgtaggtttcattctcgatcaagtaat 680

                                                                       
Query: 481 ttctgtgaaacgacattttatattagtttttattatttaatttttcttattactatctca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctgtgaaacgacattttatattagtttttattatttaatttttcttattactatctca 740

                                                        
Query: 541 ctgtcatcatcatcatttgttagctctttattggatatatatata 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtcatcatcatcatttgttagctctttattggatatatatata 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)