Query= MSMg01no047_c21.b1 MSMg01no047_c21.b1 CHROMAT_FILE:
MSMg01no047_c21.b1 PHD_FILE: MSMg01no047_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:29 2005
(541 letters)
>mm_chr16_79359141_79360083
Length = 943
Score = 913 bits (472), Expect = 0.0
Identities = 522/540 (96%), Gaps = 4/540 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcaaaattttgacccaaaattggcacaatttagaacctttcaatataggtgag 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcatcaaacttttgacccaaaattggcacaatttagaacctttcaatatgggtgag 264
Query: 65 aaaattgttcagaacgacaatcttcattcttccaggaacattacgatcttttatcattca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaattgttcagaacgacaatcttcattcttccaggaacattacgatcttttatcattca 324
Query: 125 gcacccttgacatcccaaatacttacagatatgtattaagcaacatgtaaaaaaagatac 184
||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 gcacccttgttatctcaaatacttacagatatgtattaagcaacatgtaaaaaa-gatac 383
Query: 185 attgtatgaaacagtttttcatttgtataatgaaatgcttagtaagggctatttactaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attgtatgaaacagtttttcatttgtataatgaaatgcttagtaagggctatttactaat 443
Query: 245 atgagagattcagttggtcttgattccagaggttcaagccaaggattgtgtggcctagtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgagagattcagttggtcttgattccagaggttcaagccaaggattgtgtggcctagtg 503
Query: 305 gcagaagcttagcaccaggctgggctaagctgaagtagttagtgggaagagcatcagagt 364
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct: 504 gcagaagcttagcaccaggctgggctaagctgaagtagctaatgggaagagcattagagt 563
Query: 365 gggcaaagctggtcttatgagagacttgatttgtttcttataaca---catacctatctt 421
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 564 gggcaaagctggtcttatgagagacttgatttgcttcttataacaacacatacctatctt 623
Query: 422 gactttaagtttctctgagatcagaagctaaagacctctggatctacactaattgctaac 481
||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||
Sbjct: 624 gactttaagtttctctgagatcagaagatgaagacctctggatttacacttattgctaac 683
Query: 482 agcaggggtgactaggtaacagatttattgctattgctcccttctctgtccaggcagaca 541
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 684 agcaggggtgactaggtaacagatttattgctattgcttccttctctgtccaggcagaca 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 943
Length adjustment: 10
Effective length of query: 531
Effective length of database: 933
Effective search space: 495423
Effective search space used: 495423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_c21.g1 MSMg01no047_c21.g1 CHROMAT_FILE:
MSMg01no047_c21.g1 PHD_FILE: MSMg01no047_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:29 2005
(583 letters)
>mm_chr16_79465257_79466240
Length = 984
Score = 891 bits (461), Expect = 0.0
Identities = 482/489 (98%), Gaps = 1/489 (0%)
Strand = Plus / Minus
Query: 1 aaactttagcctcaacaataagacagccatttctaatcctatatttagacattagaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaactttagcctcaacaataagacagccatttctaatcctatatttagacattagaggag 430
Query: 61 gactcaaatgaaagatgatggaagaatcaggtaataataggaaaactgagtgtgacaagt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 429 gactcaaatgaaagatgatggaaggatcaggtaataataggaaaactgagtgtgacaagt 370
Query: 121 gtatctaactcacaaatccaaaattggctatggaatgaacatatggtcataaacttacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtatctaactcacaaatccaaaattggctatggaatgaacatatggtcataaacttacat 310
Query: 181 aaaacatcatggaatc-ttttttaattaaaactaggctgtgtcttctaaagtgtgagctt 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aaaacatcatggaatctttttttaattaaaactaggctgtgtcttctaaagtgtgagctt 250
Query: 240 ttattttaaaaatctcggtttatagatgctgaagctgatcactgaccttcatatgcacat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttattttaaaaatctcggtttatagatgctgaagctgatcactgaccttcatatgcacat 190
Query: 300 ccacacacatgcatactcacccacacacacacaaacatattcatacacatgcaagaatgg 359
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 189 ccacacacatgcatactcacctacacacacacaaacatattcatacatatgcaagaatgg 130
Query: 360 tgagattgcctctcagtgtcaaaaggccaggggaatctactagcatcttgaagtcaaaga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgagattgcctctcagtgtcaaaaggccaggggaatctactagcatcttgaagtcaaaga 70
Query: 420 ataatcatcttcagtgatgatttaaggaaaatgtagagtgtctatttacaaagtccccaa 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 69 agaatcatcttcagtgatgatttaaggaaaatgtagagtgtctatttacaaagcccccaa 10
Query: 480 aacaaaagt 488
||| |||||
Sbjct: 9 aacgaaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
