BAC Information

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BAC

Clone NameMSMg01-047K05
Chromosome16 (Build37)
Map Location 78,631,222 - 78,631,542
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605
Downstream gene4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047K05.T7 (MSMg01no047_k05.b1)MSMg01-047K05.TJ (MSMg01no047_k05.g1)
ACCAG277634AG277635
length7292,025
length of high quality
(start - end)
325 (45 - 369)---
definitionCHROMAT_FILE: MSMg01no047_k05.b1 PHD_FILE: MSMg01no047_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:00 2005CHROMAT_FILE: MSMg01no047_k05.g1 PHD_FILE: MSMg01no047_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTTATGGAACGCACGACCAGCTTCAAGTCTCCTGATACACTAAG
CATCTCCTTTTCCCCTCCGTTTTATAGATCCATGCCTATCACAGTTGGCG
GTGACCCTTTTAGCTTTAACAAAAAAATCTCTGCTACTTCAGAGACACCA
CTGAGAGTTAAGACTCCCTCTATATCCACACTGTGTTAATTGCTTTTTCA
TTGCTGGAGGAAAGATATAAGAGATAAATCCCATCATGGTGAGAAAGACA
TTATCGGGAAGCACAGACCAAGAAGCTGAAGCCAGCTTGTTCACATTGCA
CCCAATCAGCAAGCAGAGAGTGAGGAGCACCTGATCTCTATTCATTTTCT
CCCTTTTATGAAATCTGGGGCCTCAGCCCACTGACTGGTACCATCCACAT
TTAGGGAAAGTCTTCCCACCTCAATCCAATAAAATCAAGAACAAGTTACA
CCTTATATACAAAGTCACAAAGTAAAGAGTCCCACTCCAAAGGGGAAGAC
TGGTGCATAGGAAGGAATTAGCGGACTAAGCAATGAAGAAGGAAGAAGAA
GGAAGACCAAAGTGTGGATACTTCAGTCCTTTTAGAAGGCCGAACAAAAT
ACCTTACGGATGAGATACAGAGACTATGTGAGGAGCAGAGACTGAAGGAA
AGGCCATCCAGAGACTGCCCCATCTGGGA
ATATTATCTTCTTTTNTTGTGTGNTGCGCTCGCGACCTTCCTCTCCATTG
CTCGTCTGCTCGCGCCGCTCGCGCGCGCCGTGCTGTGCTCGCGTGTGCGC
GGTCTNCTTCTTCTTATAGTGCNCACAAGTGGTCCGCGTAGTNGTCTATA
TGGGTCGTGGTGTTTCGCGCGCGTGTGGACCNCGCTGTTCTGATAACAAC
CTACGTGTCGTGAGACTTGTTCACGCCGTGCGTGAGTGTGATATCTCTCA
CAGCGGCCGAATATTATTATATTTATAGTCCTGCACGCATATGAGATATA
CGGAGAATNATAACGCGCCGCGCGTAATGCAGCGCAAGGATTCTGAATCG
TCACGGCGCATGCATCGTATATATAGAGCCTCGACGTAGTANCGACGAGC
GCATGATGACTAGTAGTACGCGAANTAGTCGACAGATGACGAGGACGCGC
ACACACGATAGTAGTAGCGCAAGCGCACGTCCAACCGATTATCACCGCGC
CTACGACGANATGTGTCACGCACGCGATCGATGANACCGCTCTGCGATCG
TCATTACTTGGCGTCGTTACGGTGCATCTGTGTGTTGAGACGATATAGAG
AGTGTCGCGAATGATTCATNTATGTGTGTATGCGCAGTAGCTCGTAACGC
AGCGCACTACGCCGCGACGCGTGAGCACAACGCGCGTAGCGCGAGACTCG
CTCGCACGAGTGACACACTATAGATTGATCATCGAGCGCCGATACTCGCG
AACGCGACTTACGCATCTCCCACGCGTCCGCTCGACGCAGCGTCTATCTC
TATCAGAGACTACGANACTCGACGCGCTCATCAACGATCGTACAGTGATA
GATGTTGTATCATCACCACAGCATATGACGCAGACACGTCACGNCANTCA
CNACAACAATATTAAATANAATAATTATAGTAAAGCGCACAATACATATA
GTANCGTATAGAGCGCCGTACAACATATAATGGAGACTCCTNAATACAAT
GACGCATGCTACCTAACACTCTCACGACTCTCATGATATAGCACGTTCTA
CGCACTGCGACGGCGTGTCTATAGCACAGGTGATAGTTCGTCGCGACATC
GAGTCGCATAGTCGAACTCTCTTATATATTCATACGTGACTCGTATCAGG
GAACAGACGCGTGACCGCGTAACGGTAGCTCACGACGCGACTATTCGCGC
TACAACGAGACTAGACGAGAGCTTCTGCGTGATCTTACGACATANACAGA
ATATCATAGAACGTCNGACGCAGGTATGCGTAGTATACATTACGTCTCGT
GCTCGCTACATCANCATCGCGCACGCCAGNTCGTTTNATCAATATCGATA
TCACGACCACGCCNACACACGACAAGACTGTGCACTAAGACGACATACGC
CCGTATCATACTACACAGGCAGCGGATAGATGTTGANGCACCGGTGCCAC
ACTANACANACTCATCAGANCNCTAGAGTATNGTATATGATTAGTCGTCG
AGAGATACTTTCGTATGTCGCGTGTGTCCGCTGNCAACATCTACACTATG
TCTGCATCCATNCCACTACACATGTNTAGATCGATATGACGAAGTCGACT
GTGTGATGTGCTGGTCATAGTGAGGATGATACACAGCATCGCCCGACGTG
TCGATGCAGACATGNCATCATGACGATGCCGCAGGCGTGAAGNAAGTGAT
AAGTGATAGCGGACTCATGANGACCGATGCGAGTGCGCGCGATCGTGANG
TAAGTGAGTGATTACACAGCATAGCTCATGATGATAGTGAGTGGACGAGG
AGCGAGAGATGACGTATATATATGAGAGCGACGTGTAANCGNCGATAGTG
TAGAGACGTCGTTGANCTATATATACTAGAACCTNTGCNTGAGGTCGACG
GACGCGTGACACACAGATGTCTCGCGTCTACAACTGACTATATGATATAA
TCTGCCAGACAGANTGCTACTAGTTATGACGACGCTACGAGCATTATANG
ATCGCGCGCGCCGAGCACCGCGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_k05.b1 MSMg01no047_k05.b1 CHROMAT_FILE:
MSMg01no047_k05.b1 PHD_FILE: MSMg01no047_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:00 2005
         (325 letters)



>mm_chr16_78631018_78631742
          Length = 725

 Score =  561 bits (290), Expect = e-164
 Identities = 314/322 (97%), Gaps = 2/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccttatggaacgcacgaccagcttcaagtctcctgatacactaagcatctcct 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 525 gaattctccttatggaacgcacgaccagcttcaagtctcctaatacactaagcatctcct 466

                                                                       
Query: 65  tttcccctccgttttatagatccatg-cctatcacagttggcggtgacccttttagcttt 123
           |||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 465 tttcccctccgttttacagatccatgccccatcacagttggcggtgacccttttagcttt 406

                                                                       
Query: 124 aacaaaaaaatctctgctacttcagagacaccactgagagttaagactccctctatatcc 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aac-aaaaaatctctgctacttcagagacaccactgagagttaagactccctctatatcc 347

                                                                       
Query: 184 acactgtgttaattgctttttcattgctggaggaaagatataagagataaatcccatcat 243
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 acactgtattagttgctttttcattgctggaggaaagatataagagataaatcccatcat 287

                                                                       
Query: 244 ggtgagaaagacattatcgggaagcacagaccaagaagctgaagccagcttgttcacatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ggtgagaaagacattatcgggaagcacagaccaagaagctgaagccagcttgttcacatt 227

                                 
Query: 304 gcacccaatcagcaagcagaga 325
           |||||||||||| |||||||||
Sbjct: 226 gcacccaatcaggaagcagaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)