Query= MSMg01no048_c20.b1 MSMg01no048_c20.b1 CHROMAT_FILE:
MSMg01no048_c20.b1 PHD_FILE: MSMg01no048_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:50 2005
(719 letters)
>mm_chr16_40683840_40684960
Length = 1121
Score = 1218 bits (630), Expect = 0.0
Identities = 683/706 (96%), Gaps = 14/706 (1%)
Strand = Plus / Minus
Query: 22 tcttgc-aggaaaccatcttt--aaagctttttcttgatcgccaatttatttattaaatc 78
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 921 tcttgcaaggaaaccat-tttcaaaagctttttcttgatcgccaatttatttattaaatg 863
Query: 79 cttttgactgct-----accccgctactgcatcatcgctttaagataatttgtattgccc 133
||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gttttgactgctataaaa----gctactgcatcatcgctttaagataatttgtattgccc 807
Query: 134 taagattacagattcttatatgctttgaaatacagaatggctcactagagaactgcccca 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 taagattacagattcttatatgctttgaaatacagaatggctcactagagaactgcccca 747
Query: 194 ttatgatactttctgctaaataatgtgattttttaatttttatttatgaaacacacaatt 253
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 746 ttatgatactttctgctaaataatgtgattttaaaatttttatttatgcaacacacaatt 687
Query: 254 atcaatcttcatgatgttcatgacatgataactccaataggtttttttttacattaaatg 313
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 686 atcaatcttcatgatgttcatgacatgataactccaatagg-ttttttttacattaaatg 628
Query: 314 atctgtatcaccctaatattattaaaatggtataaagttataaaaatgttgaggtataac 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 atctgtatcaccctaatattattaaaatggtataaagttataaaaatgttgaggtataac 568
Query: 374 agccattttatttaaagtttagattttacactctggtatggccactttatctgttgcacc 433
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agccattttatttaaagtttatattttacactctggtatggccactttatctgttgcacc 508
Query: 434 ctagaccatttggctgatcttccagaattcaactacttctaacttaatgaaagcaaccac 493
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 507 ctagaccatttggctgatcttccagaattcaactacttctaatttaatgaaagcaaccac 448
Query: 494 atttcaaagaattatcttttgagtaatgtaggaaaaataacaacatatctttaccccata 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atttcaaagaattatcttttgagtaatgtaggaaaaataacaacatatctttaccccata 388
Query: 554 tctcaatactatatatgaatcgcctttctccccttcagatataaacacttgaaactctcc 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tctcaatactatatatgaatcgcctttctccccttcagatataaacacttgaaactctcc 328
Query: 614 aagtatatttatgtagttcattcatattgactgctgaatatggtttaagacagtttccat 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagtatatttatgtagttcattcatattgactgctgaatatggtttaagacagtttccat 268
Query: 674 ttaaaatgataggaccggtgacttccctctatttagtagtgataat 719
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 267 ttaaaatgataggaagggtgacttccctctatttagtagtgataat 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1121
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1111
Effective search space: 787699
Effective search space used: 787699
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_c20.g1 MSMg01no048_c20.g1 CHROMAT_FILE:
MSMg01no048_c20.g1 PHD_FILE: MSMg01no048_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:50 2005
(568 letters)
>mm_chr16_40517044_40518011
Length = 968
Score = 1075 bits (556), Expect = 0.0
Identities = 565/568 (99%)
Strand = Plus / Plus
Query: 1 cactgtgaaacctcagttaaaaattaaatcaatacagactctctacttatgctaaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgtgaaacctcagttaaaaattaaatcaatacagactctctacttatgctaaattta 260
Query: 61 tacttccagttgttggtgaaaataaagacacttggttcatggaagtgcgtcagaatcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttccagttgttggtgaaaataaagacacttggttcatggaagtgcgtcagaatcctg 320
Query: 121 gttcatttcgaatagttatgaggttgatgattaccagcaaagactcagctttcatcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcatttcgaatagttatgaggttgatgattaccagcaaagactcagctttcatcttct 380
Query: 181 ttgtgaaaatatgataggggaaagacaattccagaaaaacactacagaataactgcagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgaaaatatgataggggaaagacaattccagaaaaacactacagaataactgcagga 440
Query: 241 aataccagaagaaattaagatacaaacatatgtacaaggtatgacaagaggaagagtggg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataccagaagcaattaagatacaaacatatgtacaaggtatgacaagaggaagagtggg 500
Query: 301 agattgagaaaagcccttcaggaacatccacagagctcttaagccatgaggagactaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agattgagaaaagcccttcaggaacatccacagagctcttaagccatgaggagactaaga 560
Query: 361 aaagccccaggtgtcataaatacttaaagaaacttttaacatttttgtgaaggtgtttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagccccaggtgtcataaatacttaaagaaacttttaacatttttgtgaaggtgtttgc 620
Query: 421 tatatctcactaattcagaatactgatggaagttctgatcagaacagtaaaaggagaata 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatctcactaattcacaatactgatggaagttctgatcagaacagtaaaaggagaata 680
Query: 481 gtaatacttatagactagttccttatttaacaagattactgaaattattataagttattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaatacttatagactagttccttatttaacaagattactgaaattattataagttattt 740
Query: 541 tagaaaatggcgtataagaacttcagca 568
|||||||||| |||||||||||||||||
Sbjct: 741 tagaaaatggtgtataagaacttcagca 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
