BAC Information

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BAC

Clone NameMSMg01-048K23
Chromosome16 (Build37)
Map Location 68,592,138 - 68,592,829
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm2, EG626609
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048K23.T7 (MSMg01no048_k23.b1)MSMg01-048K23.TJ (MSMg01no048_k23.g1)
ACCAG278390AG278391
length1,1771,199
length of high quality
(start - end)
694 (113 - 806)586 (77 - 662)
definitionCHROMAT_FILE: MSMg01no048_k23.b1 PHD_FILE: MSMg01no048_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:54 2005CHROMAT_FILE: MSMg01no048_k23.g1 PHD_FILE: MSMg01no048_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATGGGCCTAACXXXXXXXXXXXXXXXXXXXXXCGCGGAATTAATCCCA
CTACTGGAAGCCTTTAAAGATTACAAAATATAGCCTGTTCAGATTCTATT
TCCTTTATTACTAGTAGCTGCTAGTAGAGTCACCTGATAGATTTCACAAA
ATTTGCAGTGCACTAAGTTTCCACGCTTCCCTCTAAATGCATCAATTTCC
AGCCATGTTTCCAAGCAATCTCTCCCACCACCTAACACCCCCACCTGCCT
TCAGTCCACCCAAAAAATCTATTATACTTCTCCATCCCAAATGAATCCAT
GTGACTCCCACCACTCCATAGCCATTCTTTGTACCTAATGTCTTTGTTTT
TGTGAATTGTAGCTTGTTTATCAATTACATAACAGCTAGTATCCACTTTT
AAATGCCTACATACCATGTTTGTCTTTCTAAGTATGGATTACATTACTAA
GGATGTGAGATAAATGATTCTTCAAATTTCATAATGTCATGTTTTTAACA
GGAGAATAATACTCTATGGTGCAAATATGTCACATTCCTCTTATTAATTT
TTCAGTTGAGAGATGTCTAAGAATTTACACATGCTCACATGTAAGAAATT
ACTGATCCATGAATAATCTTTGTAATCCATTTTAAGCCTAAACTATATTT
TTCTTATCTGCTCTGGTCTAGCACAAAATAAATCATTTTTAGGCTGATCA
ATTAGTTTAAAGACTATTAGTTCTCATGTTTCTACATCTAANATTTCCAG
GTCCTAGGGACTCATATAATTTACCTTTCTAATAATACCCTATATATCAT
AAAAAAGAATTCATTGGAGATGGATGGAACAATTCTTAGGCTTCAGCTTA
TTTTTTTCAAGTTGAAGGGACTTTGCACTGTAAATTTACATTATAGTAAT
TACTAAAATGTGTTGGTATTTGAAACATTATCTCATACCACCACTATTGT
TTTTTTTCCCAAAAAAAAAAAATTACAATTTTTTTTTTAAAATTTTTAAT
TTTTTATTTCAAAAAGGGGTCCCTGGTTTTATTAAAATTGGGGGTTTATT
TTCTTTCACCGGAAAAACATGGTTTAAAAAAATTTCCTTCGTGGGAGCCC
CCCCTCATAAGGAAAAAACCCCCCAATAAAACTTTCCCCAACATAATATG
TTTCCACAAAAATTTTCTATTTATTAT
TTTTTGACATGATAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTTAGATAGCTCTGTACCCCATTTTTAAATAG
GGTTATCTTTTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATATTG
TGTATTAGCCCTCTATGGGATGTAGGGTTGGTAAAGTTCTTTTCCCAATC
TGTTGGTTGCCATTTTGTCCTATTGACAGTGTCCTTTGCTCACAGAAGAT
TCACGGTTTTATGAGGTCCCATTTGACAATTCTTGATCTTAAAGCATAAG
TCACTGGTGTTCTGTTCAAGTTTTCCCCTGTGCCCATGTATTTGAGGCTC
TTCCACACTTTCTCTTCTATTAATTTCTGTGTCTCTGGTTTTATGTGTAG
GTCCTTGATCCACTTGGACTTGAACTTTGTTCAAGGAGATAAGAATGCGT
CGATTTGCATTTTTCTACATGCTAATCACCAGTTGACCCAGCACCATTTG
TTGAAAATGCTGTCTTTTTTTTTCCACTGGAGGGTTTTAGCTCTTTTGTC
AAAATCAAGTGACCATAGGTGTATGGGTTCATTTCTGGGTCTTCAATTCT
ATTCCATTGATCAACATGGTCTCAGCCAATACCATGCAGTTTTTATCATT
ATTGCTCTGTAATACAGCTTGAGGTCAGGGATAGGAATTCCTGCAGAAGT
TCTTTTATTGTTGAGAAAACTTTTTGATAGCCTGGGTTTTTTGTTAATCC
AAATGAATTTGCCAGTTGCTCTTTCTAACTCTATGAAGAATTGAATTCAA
ATTTTGATGGGGATTGCTTTGAATCTGTAAATTGCTTTCGACCCGATGGT
TATTTTTACTATACTGACCTGCCATTCCAAAAGCATGCTAAATCTTTCCA
TCTTCTGAGAATTTCTTTTTTAATTCCCAAATTGAAGTTCCTTGTTTTTA
GAATTTTTTTTTTTTTTGGTTAAATGTTCTCTCCTATATTTCTTTTTTTT
TTTGTGTTATCTTTTGTAGGTTTAATTTTTTCTATTATTTTTTCCTNACT
CTTTTATATTTTTTCTTAATATTACTTGTTTTTTGTTTTTTATCTTTTTT
TTTCTTTCTGCTTTTTTTCCTTATTATTCTTCTTTTTTCTTTTTTATACA
CTTTGTGTTTATTTATTATTTTTGTTTCTTATAATTACTTCTATCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_k23.b1 MSMg01no048_k23.b1 CHROMAT_FILE:
MSMg01no048_k23.b1 PHD_FILE: MSMg01no048_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:54 2005
         (694 letters)



>mm_chr16_68591938_68593031
          Length = 1094

 Score = 1195 bits (618), Expect = 0.0
 Identities = 674/693 (97%), Gaps = 1/693 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagctgctagtagagtcacctgatagatttcacaaaatttgcagtgcactaagtttcc 60
           |||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agtagccgttagtagagtcacctgatagatttcacaaaatttgcaatgcactaagtttcc 260

                                                                       
Query: 61  acgcttccctctaaatgcatcaatttccagccatgtttccaagcaatctctcccaccacc 120
           | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 atgcttccctctaaatgcaccaatttccagccatgtttcccagcaatctctcccaccacc 320

                                                                       
Query: 121 taacacccccacctgccttcagtccacccaaaaaatctattatacttctccatcccaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacacccccacctgccttcagtccacccaaaaaatctattatacttctccatcccaaat 380

                                                                       
Query: 181 gaatccatgtgactcccaccactccatagccattctttgtacctaatgtctttgtttttg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gaatccatgtgactcccaccactccatagccattctttgtacctaatgtctttgtttt-g 439

                                                                       
Query: 241 tgaattgtagcttgtttatcaattacataacagctagtatccacttttaaatgcctacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgaattgtagcttgtttatcaattacataacagctagtatccacttttaaatgcctacat 499

                                                                       
Query: 301 accatgtttgtctttctaagtatggattacattactaaggatgtgagataaatgattctt 360
           ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||  |||
Sbjct: 500 accatgtttttctttctaagtatggattacatcaataaggatgtgagataaatgagcctt 559

                                                                       
Query: 361 caaatttcataatgtcatgtttttaacaggagaataatactctatggtgcaaatatgtca 420
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 560 caaatttcatgatgtcatgtttttaacaggagaataatactctatggtacaaatatgtca 619

                                                                       
Query: 421 cattcctcttattaatttttcagttgagagatgtctaagaatttacacatgctcacatgt 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cattcctcttattaattcttcagttgagagatgtctaagaatttacacatgctcacatgt 679

                                                                       
Query: 481 aagaaattactgatccatgaataatctttgtaatccattttaagcctaaactatattttt 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 680 aagaaattactgatccatgaataatctttgtaatccatcttaagcctaaactatattttt 739

                                                                       
Query: 541 cttatctgctctggtctagcacaaaataaatcatttttaggctgatcaattagtttaaag 600
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttatctactcttgtctagcacaaaataaatcatttttaggctgatcaattagtttaaag 799

                                                                       
Query: 601 actattagttctcatgtttctacatctaanatttccaggtcctagggactcatataattt 660
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 800 actattagttctcatgtttctacatctaaaatttccaggtcctagggactcatataattt 859

                                            
Query: 661 acctttctaataataccctatatatcataaaaa 693
           |||||||||||||||||||||||||||||||||
Sbjct: 860 acctttctaataataccctatatatcataaaaa 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)