BAC Information

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BAC

Clone NameMSMg01-049C07
Chromosome16 (Build37)
Map Location 72,259,505 - 72,260,205
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049C07.T7 (MSMg01no049_c07.b1)MSMg01-049C07.TJ (MSMg01no049_c07.g1)
ACCAG278706AG278707
length1,1821,216
length of high quality
(start - end)		581 (87 - 667)696 (86 - 781)
definitionCHROMAT_FILE: MSMg01no049_c07.b1 PHD_FILE: MSMg01no049_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:50 2005CHROMAT_FILE: MSMg01no049_c07.g1 PHD_FILE: MSMg01no049_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTCTTNNNNNGTCATTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTAGATCTGTACCCCATTTTTCATTAGGGTTATTT
GATTTTTTTTGAGTTCTTTCTCTATATTGGATATTTTCCCTCTATTAGGT
GTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCTTTTTGTCCT
ATTGACAGTATCCTTTGCCTTTCAGAAGCTTTGCAATTTTATGAGGTCCC
ATTTGCTGATTCTTGATCTCTGAATATTGGACATCATACTACCTGAGGAC
ACAGCTATACTACTCATGGGCATATACCCAGAAGATTCTCTAACATATAA
TAAGGACACATGCTCCACTATGTTTATAGGAACCTTATGTATAATAGCCA
GAATCTGGAACGATGCCATATGTCCCTCAACAGAGGAATGGGTACAGAAA
TGTGGTACATTTACACAATGGAGCACTACTCAGCTATTAAAAACAATGAT
TTCATGTAATTCTTAGGCAAATGTATGGAACTAGAAAATATCATCCTGAG
TGAGATAACTCAATCACAAAATAACACACATGGTATGGACTTGCTGATTA
GTGGATCTTAGCCCAAAAGCTGGGAATACCCAAGATACAATTCACATACC
ACATGAAGCTCAAGAAGAAGCAAGACCACAATATGGGTGCTTTAGTCCTT
GTTAGAAAGGGGAACAAAATACTCATGGGAGCAAATACCGAGACAAAGTG
TGGAGCAGAGACTGAAGGAAAGACCATCCAGAGACTGCCCCACCTGGCAA
TCCATCCCCATATACAATCCCCAAACCAGAACCTGTTGTGGATGCTACGA
ATAGCATGCCTTAAAAAAGCCTGATATAGTTGGTCCCCTGAGAGGTCTCT
GGCTGAATCCTGATAAATTACAAAGGTAAGATTGCTCGCCAACCACATAA
TGGAAATGAATCTATGCGGCTCCCCATAGGGGTTTCTCTTTTCTGCCCCC
CCCTTAATATAAAGGATTTAAATTATCTTTAAGGGAGTTTTGGAAAACCC
TCATATAACAACCTATTTATATTCTTAACAATCTTCTCTCTTTCTTATTC
CATGTGTGTCTCTAGTTAAATAAATCCTACCCATCTCTATGCTAATTACA
TCCGGTAGTGGCCCCTTCGTCTCTTACCCTAT

NCCTTTCTTNNNNNTATGATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAGTGCATAATTTCTTTAA
AGATTCTTTAAATTTAGGCCATTCATCAGAAAATAATATTAAGAATTATT
TTCTGCCAGTAAACTTTCTAATATTCCTTAAATTAGGAAGAGTAAGTGAA
TATAGGGTATATAAATTCTGTGACAGTCATGAAAATTGTAAATTTTTATC
TAATTTGAAGTAAAAGCTTTACCACATATTGATTTATCTATTTACTCATC
AATTAATTAAATTATTCATAAGCTCTGATGCTCTGAATGGGACAGGGAGC
TTAATCTGTCTTACTAAAAATAAAAAATCCATTATTTTCATGGCTAAATA
TCATTCAATAAACATGAGTATAGTTATCAGTATGTAGTAAATGCCAAAAA
TGTAGAGAAATGTAAAAAAAAAAACCATAGAATTTTAACTTTTTTAAATT
CCACACTGTCTATTTAATATTTTTGTTAATTTATGTTTACAGCAAAAATA
TATTTATAACCAGGCATGGTGGCACACACCTTAGGGCTATACAGAGAAAC
CCTGTCTCAGGAAAAAAAATATATTCATTTCTATACTCGTCATCAATATT
TGGGGGTATGCACATTTTTATGAGAGTGAAGTGCCATGAGTTATGATTTT
CATTCATTTATGATTAGTAGCATTGACCATTAACTTAGCTACTTGAATGT
CTTCTTTGAAAAAGAGAATTTGGATTTTCTGTGATTGAGTTGTTAACCCT
CATGTTCTTGTATGACTTATTGTCAGATATACAGGTTGAGAATATTTTCT
ACCATTCTGTAGATTGCTATAATTTCCTTTGATCTTCAAGGGTGTCTATG
CTTGGAATTCGCTAATTTTCGCTTAAGAAGCCTCTGATGTTGGAGGAATC
AATTTAAAAGATCCCTTGCCTTTCCAATGTCATGACTTTTGCTAATACTT
AAGTTTTCAAAAGTTCCTGATTTGCAGCCTTAATTTTGGAGCCTTCGACC
CTTTAATTTGACTTTTATAATCCTTACGGAAAAACCCTTAAATTTTAAGG
CTTTTCCGGGTGGAATTCCCGTTTTGTCTAAAAACTTTCCGTGGAAGAAT
CTTAATTTTCTCCCAAAAAAAACCGGGGGTGTTTTTGTAAAAAAACTTTT
TTTGAAAAGAAGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_c07.g1 MSMg01no049_c07.g1 CHROMAT_FILE:
MSMg01no049_c07.g1 PHD_FILE: MSMg01no049_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:50 2005
         (696 letters)



>mm_chr16_72259310_72260405
          Length = 1096

 Score = 1274 bits (659), Expect = 0.0
 Identities = 689/701 (98%), Gaps = 5/701 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcataatttctttaaagattctttaaatttaggccattcatcagaaaataatattaagaa 60
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 196 gcataatttctttaaagattctttaaatttaggaaattcatcagaaaataatattaagaa 255

                                                                       
Query: 61  ttattttctgccagtaaactttctaatattccttaaattaggaagagtaagtgaatatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttattttctgccagtaaactttctaatattccttaaattaggaagagtaagtgaatatag 315

                                                                       
Query: 121 ggtatataaattctgtgacagtcatgaaaattgtaaatttttatctaatttgaagtaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 316 ggtatataaattctgtgacagtcatgaaaattgtaaatttttatctaattttaagtaaaa 375

                                                                       
Query: 181 gctttaccacatattgatttatctatttactcatcaattaattaaattattcataagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gctttaccacatattgatttatctatttactcatcaattaattaaattattcataagctc 435

                                                                       
Query: 241 tgatgctctgaatgggacagggagcttaatctgtcttactaaaaataaaaaatccattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgatgctctgaatgggacagggagcttaatctgtcttactaaaaataaaaaatccattat 495

                                                                       
Query: 301 tttcatggctaaatatcattcaataaacatgagtatagttatcagtatgtagtaaatgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttcatggctaaatatcattcaataaacatgagtatagttatcagtatgtagtaaatgcc 555

                                                                       
Query: 361 aaaaatgtagagaaatgtaaaaaaaaaaa--ccatagaattttaacttttttaaattcca 418
           |||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||
Sbjct: 556 aaaaatgtagagaaatgtaaaaaaaaaaaaaccatagaattttaactttttaaaattcca 615

                                                                       
Query: 419 cactgtctatttaatatttttgttaatttatgtttacagcaaaaatatatttataaccag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cactgtctatttaatatttttgttaatttatgtttacagcaaaaatatatttataaccag 675

                                                                       
Query: 479 gcatggtggcacacaccttagggctatacagagaaaccctgtctcaggaaaaaaa---at 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |   ||
Sbjct: 676 gcatggtggcacacaccttagggctatacagagaaaccctgtctcaggaaaaatatatat 735

                                                                       
Query: 536 atattcatttctatactcgtcatcaatatttgggggtatgcacatttttatgagagtgaa 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atattcatttctatactcgtcatcaatatttgggggtatgcacatttttatgagagtgaa 795

                                                                       
Query: 596 gtgccatgagttatgattttcattcatttatgattagtagcattgaccattaacttagct 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 796 gtgccatgagttatgattttcattcatttatgattagtagcattgaccattagcttagct 855

                                                    
Query: 656 acttgaatgtcttctttgaaaaagagaatttggattttctg 696
           |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 856 acttgaatgtcttctttgaaaaggagaatttggattttctg 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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