Query= MSMg01no049_c08.b1 MSMg01no049_c08.b1 CHROMAT_FILE:
MSMg01no049_c08.b1 PHD_FILE: MSMg01no049_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:50 2005
(792 letters)
>mm_chr16_84220219_84221410
Length = 1192
Score = 1456 bits (753), Expect = 0.0
Identities = 780/789 (98%), Gaps = 1/789 (0%)
Strand = Plus / Minus
Query: 4 ggaattctattgtgcttatgctagccttcatgtgtggataaaatgttaaggaacggcaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ggaattctattgtgcttatgctagccttcatgtgtggataaaatgttaaggaacggcaga 786
Query: 64 aggcaccaattctttaatcgttgactttagaaggtcataggacacagcctctcattactc 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aggcacaaattctttaatcgttgactttagaaggtcataggacacagcctctcattactc 726
Query: 124 tttgaaaatctcacccacagaccgtaatcgtatttcctatctatatagggaagaaataga 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 725 tttgaaaatctcacccacagaccgtaatcatatttcctatctatatagggaagaaataga 666
Query: 184 tagaaaatgttggttaggagcagcattttgtaatgctgatgggaccttacagctcactgc 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tagaaaatgctggttaggagcagcattttgtaatgctgatgggaccttacagctcactgc 606
Query: 244 ggacccccaggcagctctcaccgcaaagcgtcttctgtattgaaagcagcaggggaatcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggacccccaggcagctctcaccgcaaagcgtcttctgtattgaaagcagcaggggaatcc 546
Query: 304 tattccacaccatttcccaaatcatttctcttctttagaagaatgaatatcaactgtgat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tattccacaccatttcccaaatcatttctcttctttagaagaatgaatatcaactgtgat 486
Query: 364 gggaaattgaagtcacagtaaaccaaaagggaggcgattatgacttgaaatcttaagaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gggaaattgaagtcacagtaaaccaaaagggaggcgattatgacttgaaatcttaagaaa 426
Query: 424 tatccgagccaaagctactttaagataatgaaaacattttacaaaatttgctacacgtat 483
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tatccaagccaaagctactttaagataatgaaaacattttacaaaatttgctacacgtat 366
Query: 484 gtgtactatctatagtggagtttgtaattatctagggttttaggcttaagagttttagtt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 365 gtgtactatctatagtggagtttgtaattatctagggttttaggcttaagagttttattt 306
Query: 544 gcaatgaataatttgtgttatatatctcccattatagaataacagctttttataatttta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcaatgaataatttgtgttatatatctcccattatagaataacagctttttataatttta 246
Query: 604 aagacttcataaagcaaatatttaccacatctaaagaatttttctttttttctttaattt 663
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 245 aagacttcataaagcaaatatttaccacatctaaagaattttcctttttt-ctttaattt 187
Query: 664 attgttttacatttcatattctattacccacccctgttccatcaaccctccgacttctcc 723
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 186 attgttttacatttcatattctactacccacccctgttccatcaaccctccgacttctcc 127
Query: 724 acatcccacacctcctcccccaccctgtctccacgtagatgcccccaccctccaccgcac 783
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 126 acatcccacacctcctcccccaccctgtctccacgtagatgcccccaccctccaccccac 67
Query: 784 ctgacctct 792
|||||||||
Sbjct: 66 ctgacctct 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 1192
Length adjustment: 10
Effective length of query: 782
Effective length of database: 1182
Effective search space: 924324
Effective search space used: 924324
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_c08.g1 MSMg01no049_c08.g1 CHROMAT_FILE:
MSMg01no049_c08.g1 PHD_FILE: MSMg01no049_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:51 2005
(308 letters)
>mm_chr16_84174651_84175357
Length = 707
Score = 501 bits (259), Expect = e-146
Identities = 298/319 (93%), Gaps = 14/319 (4%)
Strand = Plus / Plus
Query: 1 atgtcaatggaaaggagaaattacctgaagcagagcaccatgttcccagcatggtgaaat 60
||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct: 201 atgtcaatggaaaggagaaattacctgaagcggagca-gatgttcccaggatggtgaaat 259
Query: 61 acacaaaaagaactgtcatttgaggaaacatagtcacttttattctgagaagcctgaaga 120
||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||
Sbjct: 260 acacaaaaagaactgtcatttgagggaacatagtcaatgctattctgagaagcctgaaga 319
Query: 121 tgattgcaccttttattactgaaggagagtctaggtggtacatcaccataacaaactagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgattgcaccttttattactgaaggagagtctaggtggtacatcaccataacaaactagg 379
Query: 181 aaatttagaaaacagttagtggtttttagtatttacagccacattcaaaagaaggaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaatttagaaaacagttagtggtttttagtatttacagccacattcaaaagaaggaggaa 439
Query: 241 taagggcatacccagctctggcagatagatatggg-------------ttttgttgttgt 287
||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 440 taagggcatacccagctctggcagatagatatgggatcctcaggttttttttgttgttgt 499
Query: 288 tgttgttgttttgtttttg 306
|||||||||||||||||||
Sbjct: 500 tgttgttgttttgtttttg 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 707
Length adjustment: 9
Effective length of query: 299
Effective length of database: 698
Effective search space: 208702
Effective search space used: 208702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
