Query= MSMg01no050_c02.b1 MSMg01no050_c02.b1 CHROMAT_FILE:
MSMg01no050_c02.b1 PHD_FILE: MSMg01no050_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:01 2005
(653 letters)
>mm_chr16_28939701_28940757
Length = 1057
Score = 830 bits (429), Expect = 0.0
Identities = 493/519 (94%), Gaps = 11/519 (2%)
Strand = Plus / Minus
Query: 140 accaaaaaccaaaaccaaacaaacaaacaaaaatttatttatttattatatgtaagtaca 199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 accaaaaaccaaaaacaaacaaacaaacaaaaatttatttatttattatatgtaagtaca 998
Query: 200 ctgtagctgtcttcagacacaccagaagagggggtcagatctcattatagatggttgtga 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 ctgtagctgtcttcagacacaccagaagagggggtcagatctcattatagatggttgtga 938
Query: 260 gccaccatgtggttgctgggatttgaactcaggacctctggaagagcagtcggtgctctt 319
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 937 gccaccatgtggttgctgggatttgaactcaggacctctgga-----agtcagtgctctt 883
Query: 320 acctgctgagccatctctccagccctgggaaggtattctttgtgctacagcttcaaaaaa 379
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 882 aactgctgagccatctctccagccctgggaaggaattctttgtgctacagcttcaaaaaa 823
Query: 380 atatccatcctgtatttgggcttcagaacactaagtaacccttgctcttcattttagggc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 atatccatcctgtatttgggcttcagaacactaagtaacccttgctcttcattttagggc 763
Query: 440 caagaatttaccactgttttgcagccttttgtaaattctcccatggttcttcctttacct 499
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 762 caagaatttacaactgttttgcagccttttgtaaattctcccagggttcttcctttagct 703
Query: 500 tcctgtcacattttggagag----ttgtctgccttctgacacagatgctggtaccctgtc 555
|||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct: 702 tcctgtcacattttggagagagagttgtctgtcttctgacacacctgctggtaccctgtt 643
Query: 556 gggttctgaggccctgagaccctgtttgcaacctccagaactgacctgcagacgc-aata 614
|||| ||||||||||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct: 642 gggtcctgaggccctgagaccctgtttgcaacctccaggactgacctgcaga-gtgaata 584
Query: 615 tcagcagcatatctccctcatcctccccacaccgaatta 653
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 583 tcagcagcatatctccctcatcctccccacactgaatta 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1057
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1047
Effective search space: 673221
Effective search space used: 673221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_c02.g1 MSMg01no050_c02.g1 CHROMAT_FILE:
MSMg01no050_c02.g1 PHD_FILE: MSMg01no050_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:01 2005
(664 letters)
>mm_chr16_28761284_28762347
Length = 1064
Score = 1210 bits (626), Expect = 0.0
Identities = 655/666 (98%), Gaps = 4/666 (0%)
Strand = Plus / Plus
Query: 1 acggcctttcagacaggaaacatatgattacctt--gtactgtaaggttcccagtctctt 58
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 201 acggcctttcagacaggaaacatatgatta--ttcagtactgtaaggttcccagtctctt 258
Query: 59 tcttgagtgaaaatgaaagaacactatccctcagaagaaaatgctgaatggtagtttccg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcttgagtgaaaatgaaagaacactatccctcagaagaaaatgctgaatggtagtttccg 318
Query: 119 tagacatggttcaggttagaagtcaaggatagtctatgcaaggttggccagggcaggaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tagacatggttcaggttagaagtcaaggatagtctatgcaaggttggccagggcaggaaa 378
Query: 179 gcaagcatgtcagctggccgggttttacctgtctacatggcttagcggtgatttctctgg 238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 379 gcaagcatgtcagctggccgggttttacctgtctacatggtttagcggtgatttctctgg 438
Query: 239 ggactggcaagggtctgaagagacttataaaatactgcagcagggtaatgatgcatggct 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 439 ggactggcaagggtctgaagagacttataaaatactgcagcagggtaatgatgcatgggt 498
Query: 299 aaggcatctggaaagcaactgacaaacatttctgacatttcttgttaggaactatgtcca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaggcatctggaaagcaactgacaaacatttctgacatttcttgttaggaactatgtcca 558
Query: 359 cttgataatatgagagaattatacacaagccatcaaccaacagtttcaggctccatctgt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttgataatatgagagaattatacacaagccatcaaccaacagtttcaggctccatctgt 618
Query: 419 taccctggcataatgcccgttgaaaatgggatctgccaatctccttaatgtttaggtctc 478
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 619 taccctggcataatgcccgttaaaaatgggatctgccaatctcattaatgtttaggtctc 678
Query: 479 aagttgacataggttgaaataatcaatctaaacatgatccaggaaaattctattttccag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aagttgacataggttgaaataatcaatctaaacatgatccaggaaaattctattttccag 738
Query: 539 cttagtgtccctttttctctactgtgagaatgaaaaatacccagacaaaataataataca 598
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 739 cttagtgtccctttttctctactgtgagaatgaaaaataagcagacaaaataataatata 798
Query: 599 caaaatgcaatctctcaaatgtatttgtaattgttataaagaccaaccccattcttagtt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 caaaatgcaatctctcaaatgtatttgtaattgttataaagaccaaccccattcttagtt 858
Query: 659 tctggt 664
||||||
Sbjct: 859 tctggt 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
