Query= MSMg01no050_e04.b1 MSMg01no050_e04.b1 CHROMAT_FILE:
MSMg01no050_e04.b1 PHD_FILE: MSMg01no050_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:19 2005
(770 letters)
>mm_chr16_67041469_67042638
Length = 1170
Score = 1406 bits (727), Expect = 0.0
Identities = 745/751 (99%), Gaps = 1/751 (0%)
Strand = Plus / Plus
Query: 21 ttccttcatggcctagaaagcaaattcactaataatatctaaacatgctataatttatat 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttccttcatggcctagaaagcaaattcactaataatatctaaacatgctataatttatat 280
Query: 81 tacacctgcatactagttcatgtgtgtatgtttgggtttgaatcttgtcactgagatgtt 140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 taaacctgcatactagttcatgtgtgtatgtttgggtttgaatcttgtcactgagatgtt 340
Query: 141 ttgaacaagagtgtggatcactgaattgtctcagcattcaggcctgagagcaatggagct 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttgaacaagagtgtggatcactgaattgtctcagcattcaggcctgagagcaatggagct 400
Query: 201 gtttcttaggacactccattgtgagagtattagacattccaaaataactaaaatgatatg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtttcttaggacactccattgtgagagtattagacattccaaaataactaaaatgatatg 460
Query: 261 ttatactgccacactaaagggcaatacattacaatacacacaacgtttgaaagtttaaag 320
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 461 ttatactgccacactaaagggcaatacattacaatacacacaatgtttgaaagtttaaag 520
Query: 321 aactaataaacaatttgagatttgattataaaaaaagaaaagccttagaattgagaaagt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aactaataaacaatttgagatttgattataaaaaaagaaaagccttagaattgagaaagt 580
Query: 381 atttttctttttattattggttattgaaaaagtatttttcttttttattgggtatttatt 440
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 581 atttttctttttattattggttattgagaaagtatttttcttttttattgggtatttatt 640
Query: 441 tcatttacatttccaatgctatcctaaaagtcccccacatgctcccctacccactcccat 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tcatttacatttccaatgctatcctaaaagtcccccacatgctcccctacccactcccat 700
Query: 501 ttcttggccctggcgttcccctgtactgaggcatataaagtttgcatgaccaatgggcct 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttcttggccctggcgttcccctgtactgaggcatataaagtttgcatgaccaatgggcct 760
Query: 561 ctctttccactgatggccaactaggccatcttctgattcatatgcagctagagacacgag 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ctctttccactgatggccaactaggccatcttctgattcatatgcagctagagacacgag 820
Query: 621 ctccggggcggtg-gggggggatactggttagttcatattgttgttccacctatagtatt 679
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ctccggggtggggtgggggggatactggttagttcatattgttgttccacctatagtatt 880
Query: 680 gcagatcccttcagctccttggatactttctctagctcctccattgggggccatgtgatc 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 gcagatcccttcagctccttggatactttctctagctcctccattgggggccatgtgatc 940
Query: 740 catccaatatctgactgtgagcatccacttc 770
|||||||||||||||||||||||||||||||
Sbjct: 941 catccaatatctgactgtgagcatccacttc 971
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 770
Length of database: 1170
Length adjustment: 10
Effective length of query: 760
Effective length of database: 1160
Effective search space: 881600
Effective search space used: 881600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no050_e04.g1 MSMg01no050_e04.g1 CHROMAT_FILE:
MSMg01no050_e04.g1 PHD_FILE: MSMg01no050_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:20 2005
(769 letters)
>mm_chr16_67072872_67074041
Length = 1170
Score = 1319 bits (682), Expect = 0.0
Identities = 752/792 (94%), Gaps = 28/792 (3%)
Strand = Plus / Minus
Query: 3 gtgataagaaattatttgtgcaacacaaaagaaatgtaccatatgaaacag--aaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 858 gtgataagaaattatttgtgcaacacaaaagaaatgtaccatatgaaacagaaaaaaaaa 799
Query: 61 agtggtctgctaacaaacacagtgtcccagaaagctaaaataattattttcaacagtgat 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 798 agtggtctgctaacaaacacagtgtcctagaaagctaaaataattattttcaacagtaat 739
Query: 121 gaaattgaaaaattgaagcatccttatagtgtagagagacctagaaagaatttttatgca 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 738 gaaattgaaaaattgaagcatccttatagtgtagagagacctagaaagaaattttatgca 679
Query: 181 gtgtgtgacagcttacaaaataaagatcaaaataaaacacttggaaattaaatttatttt 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtgtgtggcagcttacaaaataaagatcaaaataaaacacttggaaattaaatttatttt 619
Query: 241 ctttacctcattgtttgtggtccttggtgttttggagttttaaaatagaggtatttctag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctttacctcattgtttgtggtccttggtgttttggagttttaaaatagaggtatttctag 559
Query: 301 tcggaacacagtagcactgtacgagatgatatcacactcttgttcgtacagagaatatat 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgggaacacagtagcactgtacgagatgatatcacactcttgttcgtacagagaatatat 499
Query: 361 cactgcaaaatattacttttcattgaaaaccaacagtcaggaatggagatccttaagacg 420
| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 498 c-ctacaagatattacttttcattgaaaaccaacagtcaggaatggagatccttaagatg 440
Query: 421 tatgccatctacaagggagcaaagcacagcaaaacatctaatatcccagaagacacactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 tatgccatctacaagggagcaaagcacagcaaaacatctaatatcccagaagatacactt 380
Query: 481 agtttccaaggcattctaccactgagctatttggccatgttttccagttttgagtgtttc 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 379 agtttccaaggcattctaccactgaggtatttggccatgttttccagttttgagtgtttc 320
Query: 541 ttctgtgataaatccaatgtgttgttcttgcctttcctgccaatgaaactgaaccctttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttctgtgataaatccaatgtgttgttcttgcctttcctgccaatgaaactgaaccctttc 260
Query: 601 tgatgctaaaatttgtgcactttacatatctgtgaaaattaaaaagagttgaag------ 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgatgctaaaatttgtgcactttacatatctgtgaaaattaaaaagagttgaagattatc 200
Query: 655 -------------------atttggaagtctgtacaagtaaggtatatttaaaatgcaaa 695
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 199 cattttcttaagagtatgtatttggaagtctggacaagtaaggtatatttaaaatgcaaa 140
Query: 696 tattatacttgagatgatgaaatcatttacattctgaaacttcagtttaaatagaattgc 755
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tattatacttgagatgctgaaatcatttacattctgaaacttcagtttaaatagaattgc 80
Query: 756 ctcacattaaag 767
||||||||||||
Sbjct: 79 ctcacattaaag 68
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1170
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1160
Effective search space: 880440
Effective search space used: 880440
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
