Query= MSMg01no050_g10.b1 MSMg01no050_g10.b1 CHROMAT_FILE:
MSMg01no050_g10.b1 PHD_FILE: MSMg01no050_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:40 2005
(530 letters)
>mm_chr16_91162607_91163535
Length = 929
Score = 868 bits (449), Expect = 0.0
Identities = 509/531 (95%), Gaps = 11/531 (2%)
Strand = Plus / Plus
Query: 5 gaattcaatacaacgtggggctccct-t--tatacatgctttgaaaggcacctcacagat 61
|||||||||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatacaacgtggggctg--tgtggt-tacatgctttgaaaggcacctcacagat 261
Query: 62 gggtttcccaattgagaaatgtatttgttctttgttgctgtgtaaaaataacatgactca 121
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gggtttcataattgagaaatgtatttgttctttgttgctgtgtaaaaataacatgactca 321
Query: 122 aattttggagttggatgccttcctggaatagtttccctccaccttacaacacttaggggg 181
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 322 aattttggagttggatgccttcctggaatggtttccctccaccttacaacacttaggggg 381
Query: 182 ctgcacagccacagcgtcgggtcggtggtggggttataagtgcaagcctttggacacacc 241
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgcacggccacagcgtcgggtgggtggtggggttataagtgcaagcctttggacacacc 441
Query: 242 acagggaaaagctaaaggagtttgcaaacagatgctgaagaagacaagggatatctcgag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acagggaaaagctaaaggagtttgcaaacagatgctgaagaagacaagggatatctcgag 501
Query: 302 ccagcactctgaggcctgcgtggtgtccagcaaggtagcaagggggagaaatgatggact 361
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 502 ccagcaccctgaggcctgcgtggtgtccagcaaggtagcaagggggagaaatgatggagt 561
Query: 362 cattcttggagtcaagcaagcagggcttcacgaagcagggatgtcacagggattatagct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cattcttggagtcaagcaagcagggcttcacgaagcagggatgtcacagggattatagct 621
Query: 422 caaggtagttccctgctccgaggacactgcggggtg--gggagcggtatcccagggacat 479
||||||||||||||||||||||||||||| |||| | |||||||| |||||||||||||
Sbjct: 622 caaggtagttccctgctccgaggacactg-gggg-gcagggagcgggatcccagggacat 679
Query: 480 ccctgctttgcctttctagaacattctaagatcttctacctcccagtaaaa 530
|||||||||| ||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 680 ccctgctttgactttctagaacattctaagatct-ctagctcccagtaaaa 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_g10.g1 MSMg01no050_g10.g1 CHROMAT_FILE:
MSMg01no050_g10.g1 PHD_FILE: MSMg01no050_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:40 2005
(582 letters)
>mm_chr16_91297721_91298702
Length = 982
Score = 967 bits (500), Expect = 0.0
Identities = 527/536 (98%)
Strand = Plus / Minus
Query: 43 tggcaggacaaagcccagtgaggcccttcctttaccatcttcattgctgctgcacagggt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 tggcaggacaaagcccagtgaggcccttcctttaccatcttcattgctgctgcacagggt 923
Query: 103 ggggcttgaaggctctgagcagagcatgttatgaacatgtaaagacttagagccatacct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ggggcttgaaggctctgagcagagcatgttatgaacatgtaaagacttagagccatacct 863
Query: 163 accctgtctgtctaaacaccccacccactccacagcgggtggtgaaggtcagagatgtcc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 accctgtctgtctaaacaccccacccactccacagcgggtggtgaaggtcagagatgtca 803
Query: 223 agtgactggctcggggtcacacagtaagaaccctggcccatagcttttggctatctgatt 282
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 agtgactggcttggggtcacacagtaagaaccctggcccatagcttttggctatctgatt 743
Query: 283 tcgctagacaccaaattcacactcagatggcaagatacttaactctgtaccgtttacatc 342
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 742 tcgctagacaccaaattcacactcagatggcaagatacttaacacagtaccgtttacatc 683
Query: 343 ctgatagttacccaaacattgcctctcgtgaacatatggcctgaactccagggttagacc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctgatagttacccaaacattgcctctcgtgaacatatggcctgaactccagggttagacc 623
Query: 403 atccagatgggccctaacacatgctaccaacgcaatgagaatcactaccgtcccctccca 462
||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 622 atccagatggggcttaacacatgctaccaaagcaatgagaatcactaccgtcccctccca 563
Query: 463 aacctgtccttggggatgggttctgctcacaaggacaggggtagcatccaagggctgtca 522
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aatgtgtccttggggatgggttctgctcacaaggacaggggtagcatccaagggctgtca 503
Query: 523 tgtagctgagcaattagaaaagactgagtcacccaagcatgcagttgagacacccc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgtagctgagcaattagaaaagactgagtcacccaagcatgcagttgagacacccc 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
