BAC Information

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BAC

Clone NameMSMg01-050G11
Chromosome16 (Build37)
Map Location 91,298,422 - 91,298,732
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1
Downstream geneIfnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050G11.T7 (MSMg01no050_g11.b1)MSMg01-050G11.TJ (MSMg01no050_g11.g1)
ACCAG279494AG279495
length1,2301,300
length of high quality
(start - end)
64 (244 - 307)312 (85 - 396)
definitionCHROMAT_FILE: MSMg01no050_g11.b1 PHD_FILE: MSMg01no050_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:40 2005CHROMAT_FILE: MSMg01no050_g11.g1 PHD_FILE: MSMg01no050_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGGCGCTAAGACTACANAGGGAGAGGACCGCGGAATTCATACAACGT
GGGGCTGCCTTTAAGCTGCTTTGAAAGGCACCTCACAGATGGGTTTCCCC
TTTGAGAAATGTATTTGTTCCTTGTTGCTGTGTAAAAATAACATGACTCA
AATTTTGGAGTTGGATGCCTTCCTGGAATACTTTCCCTCCACCTTACAAC
ACTTAGGGGGCTGCACAGCCACAGCGTCGGGTCGGTGGTGGTGTTATAAG
TGCAAGCCTTTGGACACACCACAGGGAAAAGCTAAAGGAGTTTGCAAACA
GATGCTGAAGAAGACAAGGGATATCTCGAGCCAGCACCCTGAGGCCTGCG
TGGTGTCCAGCAAGGCAGCAAGGGGGAGAAACGATGGAGTCTTTCTTGGA
GTCAACCAAGCAGGGCTTCACGAAGCAGGGATCTCACAGGGATTATAGCT
CAAGGTAGTTCCCTGCTCCGAGGACACTGGGGGGCGGTGAGCGCGATCCC
ACGGACATCCCTGTTTTCACTTTCTAGAACATTCTAATATCTCTAGCTCC
CAGTAAAACCAAATAAGGTACTCTTATTAGGAGTACTCTGTCCCAGTACC
AAAGACTAGGACTTCCTACTGCTCCCAGAAATAGGACCTTCTCACAGCCC
TTGCTCTGAATCTGCCCCTTCCGAGTCTTTTTTTCAACATTAAAACATTG
TTTCAGCCTTCCCATGTTCCCTTGAATTGTCTAACTAAATACTTTCTTGT
GGTTGTCTTAAGTTCCTCCCAAAAATTACTTTGCTCCCAACTTTTTAATT
CTTGTATGTGCTAATCTAATCACTTTTTGCTTTTCCTTGCCCCTTTTAAT
TTATTGTAAAATCATTTTTTCCTTTTAATGGTATTTATATTCATGTGTGT
CTTTGGTCCTTTACTCTCATTCTGTTTTTATAATTATACTTTTTCTTCTT
TTCTCTTTTTCTTTCTTGTTCTCTTTTAAAATCACTTCTACTTTCTAACT
CTTTTTCTTATTTTTAATTTTTCCATAATCTTATTTTCTCTATTCTCTAT
TTTTTCTTTTCTATTTTCCTTTTTCTTCATTTTCCTACATATCCTCTTAT
CTATCTATATAATTTTCTTTATTATTCTTTCATTTTTATCTATAATCNTT
TCTCTCATCTTCTCTATTAATCTACTCTCTCACTTATATTTTTATCGTAA
ATCCCCTTATACACTTTCTTATTACTCTTT
ACATGGTGCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCTTTTAAGTTCCCCAGNCAGNCCTTACTATCAGTTGGT
TCCCCCTACAAATCTGGCAGGACAAAGCCCAGTGAGGCCCTTCCTTTACC
ATCTTCATTGCTGCTGCACAGGGTGGGCCTTGAAGGCTCTGAGCAGAGCA
TGTTATGAACATGTAAAGACTTAGAGCCATACCTACCCTGTCTGTCTAAA
CACCCCACCCACTCCACAGCGGGTGGTGAAGGTCAGAGATGTCAAGTGAC
TGGCTCGGGGTCACACAGTAAGAACCCTGGCCCATAGCTTTTGGCTATCT
GATTTCGCTAGACACCAAATTCACACTCAGATGGCAAGATACTTATCTTT
TTACCGTTTACATCCTGATAGTTACCCAAACATTGCCTCCCGTGAACATA
TGGCCTGAACTCCAGGGTTAGACCATCCAGATGGCGCTCAACACCTGCTA
CCAAAGCAATGACAATCACTACCGTCCCCTCCCAAATGTGTCCTTGGGGA
TGGCTTCTGCTCCCAAGGACAGGGGTAGCATCCAACGGCTGTCATGTAGC
TGAGCAATTAGAAAAGACCGAGTCACCCAAGCATGCAGTTGAGCCACCCC
ACAAGAGGGGCCTCAGAATGCTCTGCTCCCACTCCAGCTCGTGTCCACCT
GTCACCCTGTCCTCCCCAGTACTGCCCACCCACCAATTATCAGCGAGGAG
TTTTCCTTACAACTCATAAGCTGCAAGGTTGCTTCTTTGTTGTTTGAGAT
TTATGATCCTGCCCTTTCCTGTGTCAGACTTCCCCACGTTTGAATGGTTG
GAATCACTTTCTGACCCTTACCGTCCCAATACCTATAATAAGTTTTGGCT
TTACTGTATCTCCAATTTTTTTTTTATTTTTTCCCTTTTTTAATGTTCCT
ACTTGATTTGGTACATAAGTTTCTTTTAGGTGTGGTATTTTACCTCAATC
TCTCCCATGTGACTTTTCTCCTTATTGTTTCCTCAAATATTTGTACAATC
TCATCGCCTCTCATGATATAATTTTATTATTTGTCAACCCCCCTTCCTCG
ACTTTGAAACCTCCTTCTTTATAATTTAATCCTCTCCGCGTATTGCAACA
CCTCTAACTTGTGACCTCATTCTCGCTCCAATTGTCAATCNTTCTCTATC
TATCTAGATACTACTTTCNACATCCATCTACCTCTTCTGATTCATTCGTA
TATCAATATCTATCTATACTCAGTGAAGTAATCCTCTTACAATGATCTTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_g11.g1 MSMg01no050_g11.g1 CHROMAT_FILE:
MSMg01no050_g11.g1 PHD_FILE: MSMg01no050_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:40 2005
         (312 letters)



>mm_chr16_91298318_91299029
          Length = 712

 Score =  547 bits (283), Expect = e-160
 Identities = 304/315 (96%), Gaps = 8/315 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttactatcagttggttccccct----acaaatctggcaggacaaagcccagtgaggccc 56
           |||||||||| ||||||    ||    |||||||||||||||||||||||||||||||||
Sbjct: 415 cttactatcaattggtt----ctttggacaaatctggcaggacaaagcccagtgaggccc 360

                                                                       
Query: 57  ttcctttaccatcttcattgctgctgcacagggtgggccttgaaggctctgagcagagca 116
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 359 ttcctttaccatcttcattgctgctgcacagggtggggcttgaaggctctgagcagagca 300

                                                                       
Query: 117 tgttatgaacatgtaaagacttagagccatacctaccctgtctgtctaaacaccccaccc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgttatgaacatgtaaagacttagagccatacctaccctgtctgtctaaacaccccaccc 240

                                                                       
Query: 177 actccacagcgggtggtgaaggtcagagatgtcaagtgactggctcggggtcacacagta 236
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 239 actccacagcgggtggtgaaggtcagagatgtcaagtgactggcttggggtcacacagta 180

                                                                       
Query: 237 agaaccctggcccatagcttttggctatctgatttcgctagacaccaaattcacactcag 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agaaccctggcccatagcttttggctatctgatttcgctagacaccaaattcacactcag 120

                          
Query: 297 atggcaagatactta 311
           |||||||||||||||
Sbjct: 119 atggcaagatactta 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)