Query= MSMg01no050_g22.b1 MSMg01no050_g22.b1 CHROMAT_FILE:
MSMg01no050_g22.b1 PHD_FILE: MSMg01no050_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:44 2005
(581 letters)
>mm_chr16_70451758_70452738
Length = 981
Score = 1054 bits (545), Expect = 0.0
Identities = 572/581 (98%)
Strand = Plus / Minus
Query: 1 aaaattgagaaacttctttcgtcatatcaccatttgccaagaaactgaaactgaagaaat 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 675 aaaattgagaaacttctttcgtcatatcaccatttgggaagaaactgaaactgaagaaat 616
Query: 61 gagaaactctaaccaaattacatgccacattagcaatgttttctccacaactgctaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gagaaactctaaccaaattacatgccacattagcaatgttttctccacaactgctaccat 556
Query: 121 aatttccctatgattctatcatatttataaaatgtaaataaataattggtgtttaaaatt 180
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 555 aatttccctatgattctatcatatttataaaacgtaaataaataataggtgtttaaaatt 496
Query: 181 cataaacatcatttttcattatttatctaggctacatatcccctcaatgaaatcccgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cataaacatcatttttcattatttatctaggctacatatcccctcaatgaaatcccgaac 436
Query: 241 tttttaaatatgcatgacggagaacaagtgccgtactatgacttgaagcagagtatgttg 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 435 tttttaaatatgcatgacggagaacaagtgccgtactatgacttgaagcggagtatgttg 376
Query: 301 gtaaattatttatttcatgtttaaccagaatgactgaatcattctttctaaatcacagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtaaattatttatttcatgtttaaccagaatgactgaatcattctttctaaatcacagat 316
Query: 361 gtctgggtcatttgccagagaaaaaaacagaatgccaaaacaattaaatttatatgtttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gtctgggtcatttgccagagaaaaaaacagaatgccaaaacaattaaatttatatgtttg 256
Query: 421 ctgactgacaaattggtgttttctaggctggctgttctataaaactgctgcaggcaaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 255 ctgactgacaaattggtgttttctaggctggctgttctataaaactgctgcaggctaagg 196
Query: 481 gttaataactgtcagtggacattttgttcacgttctatgttcatcatcaatttcctgaga 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gttaataaatgtcagtggacattttgttcacgttctatgttcatcatcaatttcctgaga 136
Query: 541 aattgaaatttattgttttataaagcacatactttcatgct 581
|||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 135 aattgaaatttagtgttttataaagcacgtactttcatgct 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_g22.g1 MSMg01no050_g22.g1 CHROMAT_FILE:
MSMg01no050_g22.g1 PHD_FILE: MSMg01no050_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:44 2005
(596 letters)
>mm_chr16_70321840_70322835
Length = 996
Score = 969 bits (501), Expect = 0.0
Identities = 562/605 (92%), Gaps = 36/605 (5%)
Strand = Plus / Plus
Query: 2 tgatatctgctcaccagtatttgttcaccgctgtcgtgaatccaggctgcttttatgttc 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 202 tgatatctgctcaccagtatttgttcactgctgtcgtgaatccaggctgcttttatgttc 261
Query: 62 aataaacaaagccctgcttcattttgtgttaggggtaacagagacctggagcttcaacaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aataaacaaagccctgcttcattttgtgttaggggtaacagagacctggagcttcaacaa 321
Query: 122 aaagaagacattaaatatgtagttttataatttacatttattgatttatttaataatttc 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaggaagacattaaatatgtagttttataatttacatttattgatttatttaataatttc 381
Query: 182 attgtatattctctgctactgtgtagctatggcaactaacttgtaaaacttgattttatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attgtatattctctgctactgtgtagctatggcaactaacttgtaaaacttgattttatt 441
Query: 242 tttatttttgtgtgtgtgattaatggtttcatctaaaccttgtttttttcccaaggtaaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttatttttgtgtgtgtgattaatggtttcatctaaaccttgtttttttcccaaggtaaa 501
Query: 302 aaattaattaaaatatattgctctctacctcttctaccttcccctgtccctcactccctc 361
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaattaactaaaatatattgctctctacctcttctaccttcccctgtccctcactccctc 561
Query: 362 ttaaattcatggcctcttatcttaaaattatcatgttttacacacacacacacacacaca 421
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttaaattcatggcctcttatattaaaattatcatgttttacacacacacacacacacaca 621
Query: 422 cacacacacacacatacatgcacacacacacacgagtaaatatacaaatacaacccacag 481
||||||| ||||||||||||||||||||| |||||
Sbjct: 622 cacacac--------------------------gagtaaatatacaaatacaacgcacag 655
Query: 482 agttcattaagtgtagcttgcttatatatatatatatat----------tggtacaaatt 531
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 656 agttcattaagtgtagcttgcttatatatatatatatatatatatatattggtacaaatt 715
Query: 532 acttggttttggataaccagttaaggatgggttcatctttgaggaagactggttctccct 591
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 716 acttggttttggataaccagttaaggatgggttcgtctttgaggaagactggttatccct 775
Query: 592 cagta 596
|||||
Sbjct: 776 cagta 780
Score = 70.3 bits (36), Expect = 4e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 400 tacacacacacacacacacacacacacacacacaca 435
||||||||||||||||||||||||||||||||||||
Sbjct: 143 tacacacacacacacacacacacacacacacacaca 178
Score = 66.5 bits (34), Expect = 6e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 401 acacacacacacacacacacacacacacacacac 434
||||||||||||||||||||||||||||||||||
Sbjct: 146 acacacacacacacacacacacacacacacacac 179
Score = 62.6 bits (32), Expect = 8e-14
Identities = 36/38 (94%), Gaps = 2/38 (5%)
Strand = Plus / Plus
Query: 400 tacacac--acacacacacacacacacacacacacaca 435
||||||| |||||||||||||||||||||||||||||
Sbjct: 135 tacacacatacacacacacacacacacacacacacaca 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 5
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
