BAC Information

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BAC

Clone NameMSMg01-051G01
Chromosome16 (Build37)
Map Location 72,946,364 - 72,960,629
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051G01.T7 (MSMg01no051_g01.b1)MSMg01-051G01.TJ (MSMg01no051_g01.g1)
ACCAG280158AG280159
length1,2761,389
length of high quality
(start - end)
364 (41 - 404)315 (78 - 392)
definitionCHROMAT_FILE: MSMg01no051_g01.b1 PHD_FILE: MSMg01no051_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:58 2005CHROMAT_FILE: MSMg01no051_g01.g1 PHD_FILE: MSMg01no051_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,960,276 - 72,960,629)(72,946,364 - 72,946,670)
sequence
GATTTCTNNNNGGTCATTTGGCGCTAAGACTCCANAGGGAGAGGATCCGC
GGAATTCAAACGGGGACCCCTCTCTCTTTCCTCTTTATTCTAAATATTTC
TGGGGTTTTTGACTAATCCATTTCTTGCTCATGCCACCGGTGTCTCATTT
CACGATACTTGGATTTTTGTTTGCAGATAACTAATACCTGTATTTTCTGT
TTAAAAAAAAAGGTAGAAAATGGTTATACCTGACTCCCCTCTCTCCTCCA
AAAGATAGCTGGTTGAGGATTTCCAGTTGCTTCGCACTGAAACGTCACAG
TTCTTCCCAAGGCAACCACCTGGTCCCGAGGTTTTACAACGAAATGTGGC
GGCTCTAGAGAAACGAAACACAGGGAATCAGATCATGGCACCACAGTCCC
TACAGTTTTCTGCCTTCATTTCCTACACCACAGTATAATCACTGACCACC
CTCCCTTTAAACTAAAATTGCTACGTGCATATTTATAGAATGAAATACAG
TTGTATTGTGAAGAGCTATCACTCAACCTAGAACCCTCACATTTATAAGA
ACTCTTGAGCTATTTGCTGACCCTTTCCTATTCAATTCCTACCCGAAAAT
TATTGTACTATTAACTATTATCTTTTCTCACTGCTACCTGCTTCATCTTT
TTCTTTGTTTCATCTTGCTCTTTCTTCAATCTTTATATTCATTCCCTTTT
TTGAATTACCTTTATTTTATTCCTTTTACCCTTTTATTTGTTTCTCTCCT
TTATTTATTTCTTTTTTTTCCTTTTTTTTTTCTTTTTATTCTTCTTTTTT
TTTTCTTTTTAATCTTTTTTTCTTTTTTTTTTTTCTCTTTTTTTTTTTTT
CTTTTCCTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTCCCTACA
CTTTTTTTTCTTTCTTTTTCTCTTCTTAATTCTTTACTTTACTATTTTTA
TCTCTTCCATTACTCCTCTTTCTTTTCTTTCTCTATCTCTTCTTTCCTTC
TTCTCTTCTCCTCTTCTTTTTCTTTCTTTTCTCTTCTCTTTTTTCTTTCT
TATTTTTTCTCTTCTTTCTCTCATCTCATTTCTATTCCTCTTCTTTTCTT
TCTTCTTTCTCTATCTTTCTCTCTTTTCTTTTTTTTTTTTTTCTTTTTTT
TTCTTTATATTCCCTTACCTACTCTCCTTTCTTCTCTTCCTTTCTTTTTT
TCTTTCCTTTTTTTCCTTCCTTTTCTTTCTTTTCTCTTCTCCCCTATTTT
CTATTTTTTCCTCTTCTTTTTCTTTT
NNAAGATATTTTNTTAGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTTAGGGGGGATGTATCTT
TGTTGTATGCAAACATGAACCCTTTTTATAAGAATTTCACCGCCTTTAGA
TTTTGATGTCCACAGGGCTTGTGAAACTAATGCCATAATATATTGATCAC
TGCTTGGGTGGATAAATCCCTGGCAATAATTGTCATAGAATTTAGCCTTA
AAATTTGGATCAAGCGGTATCTTCCATTACAAGAGATGAGCATCCCTGTA
CTTAGTCATTTTCTAATATAAAAGTTACCCTTTTGACAATAAGATAATTT
GGGTTTTCTATCGTGTCATGGTTACATGTGGCCCTTTGAGAGTGCTACCT
GGTTATTTTTTTTTTCAGAATTATCGTGAAAAATCATTTCTTATTGATCA
ATCTCCCCCCTATTATTTTTTTATCTCTCTAATTACTGTTTTATTTTACT
GACAAAAAGTCTCTTTATTTTCTTTTTCTATTGTTCTCTTTCAATCACTT
CTCCTCGTCTTATTTTATTTTATCTTCCTCTCTTTTCTTCTTTTCCTTCT
TTTTTTTCTTTTTTTCTCTTTTTTTTCTTTTTTTTATTTTCATTTTTTAT
TTTCTCTTTCTTTTTTCTTTTCCTTTCTATTTCTTTTTTTCTTTTTCTTT
CCTTTCTTTATCCTTTTTCATTTTTCTATTTTTTTTCTTCTTCCTATTTC
CTCTTTTTTTTTTCCCTCTTCTTTTCTCTTTTCCTTATTTTTTCTTTCTT
CTACTCTTTTATCTTCTTCATTCTTTCTTTTTCTTTTATTTTTTTTTCCC
ATAATATTATTTTTTTTTTTTTTTTTTTTCTATTTTTTCATTGTTTTTTA
CTTTTATTCTTTTCTTTATTTTTTCTCCCTTCTTATTCATCTTTTTTCAT
TTACCTTCTTCTTTATTTTTTCTTCTTTTTTTTTCTTTTCTTCTTTTTTT
TCTTTTTTCTTTTCTTTTCTTTTACTCCTTTTTTTTATTTTTTTATCTTT
TATTTATATTTTTTTACTTTTTTTATTTTTCCCCTTAATATCTTTTATAA
TTCTTTCCATTTTTCTTCTTCTCCTACTTTCCTATTAATTCTTCATCTTT
TTCTTCTTCTTTTTTCTTTTTTTCTTTTCCTATTACCTATTTCTTTTTAC
TTTTTTATTTATTCTTTTTTCCCCTTTTTCCTTTATTTTTTTCCTTCTTT
TTTCTATCTCTTCTCTTTTTTTCCTCTCTCTTTTCTTCTATTNTTTTCAT
TCTATATTTCTCCTCTTTTTTTTTCTCATTTTCTCATCTCATCCTTTTTT
ATTTTCTTTCTCTTTCAATTTATTTTCTCTTTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_g01.b1 MSMg01no051_g01.b1 CHROMAT_FILE:
MSMg01no051_g01.b1 PHD_FILE: MSMg01no051_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:58 2005
         (364 letters)



>mm_chr16_72960065_72960829
          Length = 765

 Score =  592 bits (306), Expect = e-173
 Identities = 342/354 (96%), Gaps = 1/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcaaacggggacccctctctctttcctctttattctaaatatttctggggtttttg 71
           ||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 565 gaattcatacggggacccctctctctttcctcttcattctaaatatttctgggatttttg 506

                                                                       
Query: 72  actaatccatttcttgctcatgccaccggtgtctcatttcacgatacttggatttttgtt 131
           ||||||||||||||||||||||  |  ||||||||||||||| |||||||||||||| ||
Sbjct: 505 actaatccatttcttgctcatgtgattggtgtctcatttcacaatacttggatttttctt 446

                                                                       
Query: 132 tgcagataactaatacctgtattttctgttt-aaaaaaaaaggtagaaaatggttatacc 190
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 tgcagataactaatacccgtattttctgtttaaaaaaaaaaggtagaaaatggttatacc 386

                                                                       
Query: 191 tgactcccctctctcctccaaaagatagctggttgaggatttccagttgcttcgcactga 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgactcccctctctcctccaaaagatagctggttgaggatttccagttgcttcgcactga 326

                                                                       
Query: 251 aacgtcacagttcttcccaaggcaaccacctggtcccgaggttttacaacgaaatgtggc 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacgtcacagttcttcccaaggcaaccacctggtcccgaggttttacaacgaaatgtggc 266

                                                                 
Query: 311 ggctctagagaaacgaaacacagggaatcagatcatggcaccacagtccctaca 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggctctagagaaatgaaacacagggaatcagatcatggcaccacagtccctaca 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 765
Length adjustment: 9
Effective length of query: 355
Effective length of database: 756
Effective search space:   268380
Effective search space used:   268380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no051_g01.g1 MSMg01no051_g01.g1 CHROMAT_FILE:
MSMg01no051_g01.g1 PHD_FILE: MSMg01no051_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:58 2005
         (315 letters)



>mm_chr16_72946158_72946870
          Length = 713

 Score =  497 bits (257), Expect = e-145
 Identities = 296/309 (95%), Gaps = 2/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   taggggggatgtatctttgttgtatgcaaacatgaaccctttttataagaatttcaccgc 66
           |||||||| ||||||||||||||||||||||||||| || ||||||||||||||||  ||
Sbjct: 207 tagggggg-tgtatctttgttgtatgcaaacatgaaaccattttataagaatttcaatgc 265

                                                                       
Query: 67  ctttagattttgatgtccacagggcttgtgaaactaatgccataatatattgatcactgc 126
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 266 ctttagattttgatgtccacagggctcgtgaaaccaatgccataatatattgatcactgc 325

                                                                       
Query: 127 ttgggtggataaatccctggcaataattgtcatagaatttagccttaaaatttggatcaa 186
           |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 326 ttgggtggat-aatccctggcaataattgacatagaatttagccttaaaatttggatcaa 384

                                                                       
Query: 187 gcggtatcttccattacaagagatgagcatccctgtacttagtcattttctaatataaaa 246
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcggtatcttccattagaagagatgagcatccctgtacttagtcattttctaatataaaa 444

                                                                       
Query: 247 gttacccttttgacaataagataatttgggttttctatcgtgtcatggttacatgtggcc 306
           ||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct: 445 gttacccttttgacaataagataatatgggttttctatcatgtcgtggttacatgtggcc 504

                    
Query: 307 ctttgagag 315
           |||||||||
Sbjct: 505 ctttgagag 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 713
Length adjustment: 9
Effective length of query: 306
Effective length of database: 704
Effective search space:   215424
Effective search space used:   215424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)