BAC Information

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BAC

Clone NameMSMg01-051K17
Chromosome16 (Build37)
Map Location 69,169,919 - 69,170,328
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream geneSpeer2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051K17.T7 (MSMg01no051_k17.b1)MSMg01-051K17.TJ (MSMg01no051_k17.g1)
ACCAG280361AG280362
length1,3711,303
length of high quality
(start - end)
94 (125 - 218)410 (92 - 501)
definitionCHROMAT_FILE: MSMg01no051_k17.b1 PHD_FILE: MSMg01no051_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:41 2005CHROMAT_FILE: MSMg01no051_k17.g1 PHD_FILE: MSMg01no051_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTTATTNNNNNGCATTGGCGCTATAGACTCCANAGGGAGAGGATCCGC
GGAATTCACATGGAGGGACCAGTCTCGTTAAGTAGCAGAGGATGGTCTTG
TCAGTCATCAGTGGGCCTTTAGACCATTGGTCCTGCCCAAGGCTTGATGC
TTTAGTGTAGGGGAATGCCAGGACAGGGAAGCAGGAATGGGTAGGTTGGT
GAGCATGGGGGTGGGGGGATTTTTTCTTTTTTCTTTTTTTTCCTCTTTTT
TTCTTCTTTTTCCTTTTTTCTCTTCCTTTTTTTTTTTCTTTCTTTCTTTT
TATCTTCTCTTTTCTTTTTTTTCTTTTCTTTTTTTTTTTTCTTTCTTCCT
TTTTCTTTTTTTTTTCCTTTCTTTTTTCTTTTTCTTTTTTTCCTCTTCTT
TTCTCTTTTTTTTTTTTCTCCTCTCCTTTCTTTTCTTTTTTTTTTTTTTT
TTTCCTCTCCCCCCCTCCTTTTTTTTTCTTCCCCCTTCCCCCTTCCTTTT
TCTTTTTTTTTTTTATCATTATTTTCTTTCTTCCTTTTCTTTCTTCTCTT
TCTTCTTTTTCTTTTTCCTTTTTTTTTTTTTCTTTTTTTTTTTTTTCTTT
TCTTTTTTTTTCTTTTTTTTCTTTTTTCTTTTTCTTTCTTTTTTTTTTTT
TCTTTTTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTCTTCCTTTCTTTTT
TCTCTTTTTCTCTTTTTTTTTTCTTTTTCTCTTTTTCCTTTTTTTTTCTT
TTTTTTCTTTTTTTTCCTCTTTTTTTTTCTTTCTTTTTCTTTTTTTTTTT
TTTCCCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTCCTTTTTTTCTTTT
TTTTTTTTTTTTTCCTTTCTTTTTTTTTTTTTTTTTTCTTCTTTTTTTTT
TTTTCCTTTTCTTTTCTTTTTATTTTTCTTCTTTCTTTTTTTTTATTTTC
TTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTATTTTTATCTTTTTTCC
TTTTTCCTTCCCTTTATTTTTTTTTTTCTTTTTTCTCTTCTTTTTTTTTC
TTTTTTCTTTTTTTCTTTTTCTTTCTTTTTTCCTTCTTCTCTTTTCTTTT
ATTCTCTTTTTTCTCTCTTCTTCTTTTTTTTTTCTTTTCTTTTTCTTTTT
TTTCTTTTTTCCTTCCTTTTTCTTATTTTTTTCTTTTTATTATTTTTTCC
TCTCTTTTCTCTTTTTTTCAATTTTTTACTTTTTTTCCTCTTTTTTTTTT
CTTTCCTTTTTTTTTTTTCTTTTCTTTTTCTTTTCTTTTTCTTTTTTCCT
TTTATTTTTTTTCTTTTCTTACTTCTTTTTTTTTCTTTATTNCCTTTTTT
CTTATTTCCTTTTTTTTTTTG
NTTTATTTTTNNNNAAAGCACGTGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTTAATGAAGGGAAAAT
AACTGATCAACACTGAGAGAACTTCATAAAACTAGGACCTACCGCTTATC
TGAAACTACCTGGATTAATATATTAAGATATAAGGAAATGCACAGAAACA
TACAAGAACTTACAGAAATTTAATATGGAAAGTGCACTTGGAAATTAATT
CTCTTGGGTATTTTACCTATTGTATTTGCTTGTACAGTGAACTATCATGT
AGTGAATCAGATCAATATATTATATAAATATGGTATATTTATTTTAATAT
AATCTACAAATTTTGGAGAATATATGCAGAAACATGTAGAGTTAATTTTA
CCAACAAGTGTATTTTTTAGGTTACATACAACCCCACGTAATTTACTTCA
TTCTGCAGATGCTAATTACCTTACGACATGATTCAGGATATATTTTCAAG
GAAGCATAACTTTGGTAGTTGTCTATGGGAATGGGAAATTCCTCTACGAC
CACAATATACTTTTCCCCCATGCACCCTACCTCAGCTGAACTCACCTTTC
ATAAATAAATGTGCATTAGCACATTTATAAAAGCTACCTAAACATCTCAA
CTTCATTTCCCACTAACTATAATTATATGTAGTTTAAAATATTTATTTTC
ATTTGCCCATTTTATCCTCCTCCTTTACTGTCTTATTATCTTCAAAATAT
TTGCCTTGATCTATTTTGCTACACTACCTTCCATCCTACCCCTTTATTTT
TTTGTTCTTCACTTCCTTTCTATTCCTTTTCATCCTCCTTTTTAATTCCC
ATTTTTTCTAATTCTTCTCTTTTTCCATTTCTTTTTTTATTTTCTCTTTT
TTTTTTTCTCTTTTATCTACCTTCTTTATCCTTTATCCTTCTTCTTCTGC
CCCTTTCTCAATTTTTTTACCTTTTTCCCTTTTTTTTTTCTTCTATCTTA
CTTTTTTCTTCTTCTCTCCCTCTTTCTTTTCTTTTTTCTCCTTCTCATTC
TACTTCTTTCTTTTTCTTTCTTTCTTTGTCCTCTTCTTCTGCTTCTCTTT
TTTTACCTCTTTTCTCACCTCTCTCATTCCCTCTCTTTCTCTCTTCTCAT
CCTGTTTCTTCTCCCCTTTCTTCCCCCTCTCTCTTTTATCTTTATTTTAC
TGTCTTTCCCTTTCTCTCTTTTTCTTTCTTTTCTTCTCCTTCTCTCTTTT
CTTCTTCTTATCTTATCTCTTCTCGCTCTCTTGTCTTTCCTTTTATCTCC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_k17.g1 MSMg01no051_k17.g1 CHROMAT_FILE:
MSMg01no051_k17.g1 PHD_FILE: MSMg01no051_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:41 2005
         (410 letters)



>mm_chr16_69169907_69170716
          Length = 810

 Score =  692 bits (358), Expect = 0.0
 Identities = 397/414 (95%), Gaps = 8/414 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggaaaataactgatcaacactgagagaacttcataaaactaggacctaccgcttatct 60
           ||||||||||||||||||| |||||||||| |||||||||||||||||||  ||||||||
Sbjct: 422 agggaaaataactgatcaagactgagagaaattcataaaactaggacctaatgcttatct 363

                                                                       
Query: 61  gaaactacctggattaatatattaagatataaggaaatgcacagaaacatacaagaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaaactacctggattaatatattaagatataaggaaatgcacagaaacatacaagaactt 303

                                                                       
Query: 121 acagaaatttaatatggaaagtgcacttggaaattaattctcttgggtattttacctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acagaaatttaatatggaaagtgcacttggaaattaattctcttgggtattttacctatt 243

                                                                       
Query: 181 gtatttgcttgtacagtgaactatcatgtagtgaatcagatcaatatattatataaatat 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtatttgcttgtacagtgatctatcatgtagtgaatcagatcaatatattatataaatat 183

                                                                       
Query: 241 ggtatatttattttaatataatctacaaattttggagaatatatgcagaaacatgtagag 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 182 ggtatatttattttaatataatctacaaattttggagaatatatgtagaaacatgtagag 123

                                                                       
Query: 301 ttaattttaccaacaagtgtattttt----taggttacatacaaccccacgtaatttact 356
           |||||||||||||||||||||    |    ||||||||||||||||||| ||||||||||
Sbjct: 122 ttaattttaccaacaagtgta----tagagtaggttacatacaaccccaagtaatttact 67

                                                                 
Query: 357 tcattctgcagatgctaattaccttacgacatgattcaggatatattttcaagg 410
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 66  tcattctgcagatgctaattaccttatgaaatgattcaggatatattttcaagg 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)