BAC Information

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BAC

Clone NameMSMg01-052B09
Chromosome16 (Build37)
Map Location 55,875,963 - 55,876,373
singlet/doubletsinglet
Overlap geneGm1752
Upstream geneLOC667927, LOC436421, Zpld1, Nfkbiz
Downstream geneLrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp, Tfg, Gpr128, Tmem45a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052B09.T7 (MSMg01no052_b09.b1)MSMg01-052B09.TJ (MSMg01no052_b09.g1)
ACCAG280667AG280668
length687684
length of high quality
(start - end)
418 (45 - 462)411 (72 - 482)
definitionCHROMAT_FILE: MSMg01no052_b09.b1 PHD_FILE: MSMg01no052_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:35 2005CHROMAT_FILE: MSMg01no052_b09.g1 PHD_FILE: MSMg01no052_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCCTTTGTCCTGGAGAGATGACTCAGAGGTTAAGAGCACTGACTG
TACTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCAT
AACCATCTGTAATGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAG
CTACAGTGTATTTCCATATAATAAGAAAAATAAATCTTAAAAAAAAAAGA
AAAAGAAAAAAGAATTCAGCCTTAAGGGCTACAGAGACGGCTCAGTGGTT
AAGAGCATGGGCTGCTCTCCCAGAAAACTCAATCAAGTTCAATTCTCAAC
ACAAATATGTCAGCTTGGAACCACCTATAACTCCAGTTCCAGAAGATTCA
GCATGTACTTCCGTCCTTTTGGACACCAGGCATGTGCATGACGCATAGAC
ACACACACACAAGCAAAACACCAATACACATTAAATTAAATTAAGTTAAA
AGGTAAGTCAGCCTACCTTACCTACATGCAGTGACATTTGATATTGATTG
TAACTTACACAGCCTGATTCATATTTCATTCCTCTGGGGTCTGTGCCACT
ATTTATGTCAGGACAATAAGGTCCTTCTGATGTAATAAGGAAGTCCCGTT
CCACAGGACTCATTACCCAGTGTTGCTTCAAATTTCC
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTAAGTAGACCGGGCTTGACCTCAAACT
CAAAGAGATCTGCCATCCCCTGCCTCCTGAGTGCCAGGATCAAAAGTGGG
CATCACTACCAACCAACCTCCCTGCACTCTTTCCTTAGGTACCCTGTATA
TACCACCTCACATTATCTTTTTATTAGGTACCCTGTATATGCCATCTCAC
GTTGCCTTTTTAATTAAAGTTGAGCCTGTACATTTTAGATAGTTATTAAA
TATGTTAACTTCATGACGAACATAGTCAGGATCAGAAACACAGAACGTTA
ATGAGATTGAGGGTTGGAAGACTGCCAGACTTCAGCGCCTTTGCAGTCTC
ACCCCACGCTCATCACGAGAAACAGAAGTATTTGAAATTCACAGCAACTC
TCTGTCCCGGATCCTGTGACCTCTGCTTTGGACAGTAAGTAGTTTATCCA
ACTCCACCCAAGCCTCCCTTATTGTTTCCATCCTGGGAACTGTCTCTCAC
CACTGCTTACCCGAACCTCCCTTCTTCATCATTCAGAGCTATTTGTTCAG
ACAATTAGAGCTTCTAACTAGCCCTTAGCCCAGAAGTTTCCAAGAATGCC
TCAGGACTTTTCCTAACACTCTTTCCTGACTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_b09.g1 MSMg01no052_b09.g1 CHROMAT_FILE:
MSMg01no052_b09.g1 PHD_FILE: MSMg01no052_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:35 2005
         (411 letters)



>mm_chr16_55875763_55876573
          Length = 811

 Score =  764 bits (395), Expect = 0.0
 Identities = 407/411 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaagtagaccgggcttgacctcaaactcaaagagatctgccatcccctgcctcctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaagtagaccgggcttgacctcaaactcaaagagatctgccatcccctgcctcctgag 260

                                                                       
Query: 61  tgccaggatcaaaagtgggcatcactaccaaccaacctccctgcactctttccttaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccaggatcaaaagtgggcatcactaccaaccaacctccctgcactctttccttaggta 320

                                                                       
Query: 121 ccctgtatataccacctcacattatctttttattaggtaccctgtatatgccatctcacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgtatataccacctcacattatctttttattaggtaccctgtatatgccatctcacg 380

                                                                       
Query: 181 ttgcctttttaattaaagttgagcctgtacattttagatagttattaaatatgttaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcctttttaattaaagttgagcctgtacattttagatagttattaaatatgttaactt 440

                                                                       
Query: 241 catgacgaacatagtcaggatcagaaacacagaacgttaatgagattgagggttggaaga 300
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 catgacgaacatagtcagggtcagaaacacagaaggttaatgagattgagggttggaaga 500

                                                                       
Query: 301 ctgccagacttcagcgcctttgcagtctcaccccacgctcatcacgagaaacagaagtat 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 501 ctgccagacttcagcgcctttgcagtctcaccccacgctcatcaccagaaacagaagcat 560

                                                              
Query: 361 ttgaaattcacagcaactctctgtcccggatcctgtgacctctgctttgga 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaaattcacagcaactctctgtcccggatcctgtgacctctgctttgga 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)