BAC Information

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BAC

Clone NameMSMg01-052F01
Chromosome16 (Build37)
Map Location 13,014,841 - 13,015,122
singlet/doubletsinglet
Overlap genenone
Upstream gene2700045P11Rik, EG622509, LOC622553
Downstream geneErcc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052F01.T7 (MSMg01no052_f01.b1)MSMg01-052F01.TJ (MSMg01no052_f01.g1)
ACCAG280835AG280836
length685681
length of high quality
(start - end)
291 (85 - 375)281 (73 - 353)
definitionCHROMAT_FILE: MSMg01no052_f01.b1 PHD_FILE: MSMg01no052_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:54 2005CHROMAT_FILE: MSMg01no052_f01.g1 PHD_FILE: MSMg01no052_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAAGAGGG
GCGGAATTCTCACCTGTTCAATACCGAATGGTAGAGAAGCACCTGAAAAA
ATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCATTCTGGCGGTTCC
TCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAATATGCCCCAACTGGCAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCA
CATGCCCCTCAACAGAGGAATGCATACCGAAAATGTGGTACATCTATTCT
ATGTAGCACTACTCCTCTACTAAAAAGAATGAATTCATGAAATTCCTATC
CCAATGGATGGACCTGTAGGGTATTATCCCGAGTGACGTCACCTATTTTT
ACCGGAACTCACCCCCCTATGTCCTCTCTGATTTTACGCCCCCTACCCTC
ATAATCTACTATCTTCTTTATCTCCCCATTTTTCC
TCGATGCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTGTCCCCAGACTCAGCTTCATTCAG
ACCTTCTGAGTGTTTTTCCGAGTGTCTCAGCCCTTTTTCTACAAGAGCCT
CTGCTCCCCTTTCACTGCTGTGGTAGATGATGCAAAGGGCTGCCTTGCTC
TGTGATTGAGGTTGAAAGCATTTTTTTTAGGTCCTGGCCGGGGACTTGAC
TCCCTACCCATGTGCTCGCTCCTCTCTTTGATCCCACCGATCACTTCTGG
AACTGTTACGAAAAAAGATACTGAGCACCAAACCAGCATCAGCCCCTCAA
GGACAAGCACGAAGGGTTTAAAATGTAAACCTAATTAAATTTTATTAAAC
CTGAAATTAATTAGCCCTGTCTCTGGTTTAAAGCTCCCACAGAGGCCGCT
TAAGCTGCCTGCTTGCGGATGAGGATGAATGGACTTTGCCTATAGGCTGC
TAGAGATCTCTAACGCCTTACTTGAAGCGCACCCTGCGCATTGGAGGGGA
TAGGTTGAATCAGCCCTTCTCACTCCGCCGTTTTCTGTTTCCCGGTTCCC
AGCACAGTTCAAACCTAAGGCAAAGCCTTAGTTGCAGCCATGCCACGCCC
CCCATTTTTCCCCGCAAGCTCTTGAACTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_f01.g1 MSMg01no052_f01.g1 CHROMAT_FILE:
MSMg01no052_f01.g1 PHD_FILE: MSMg01no052_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:54 2005
         (281 letters)



>mm_chr16_13014641_13015322
          Length = 682

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%), Gaps = 1/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgtccccagactcagcttcattcagaccttctgagtgtttttccgagtgtctcagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aattgtccccagactcagcttcattcagaccttctgagtgtttttccgagtgtctcagcc 423

                                                                       
Query: 61  ctttttctacaagagcctctgctcccctttcactgctgtggtagatgatgcaaagggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctttttctacaagagcctctgctcccctttcactgctgtggtagatgatgcaaagggctg 363

                                                                       
Query: 121 ccttgctctgtgattgaggttgaaagca-ttttttttaggtcctggccggggacttgact 179
           |||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||
Sbjct: 362 ccttgctctgtgattgaggttgaaagcatttttttttaggtcctgggtggggacttgact 303

                                                                       
Query: 180 ccctacccatgtgctcgctcctctctttgatcccaccgatcacttctggaactgttacga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccctacccatgtgctcgctcctctctttgatcccaccgatcacttctggaactgttacga 243

                                                     
Query: 240 aaaaagatactgagcaccaaaccagcatcagcccctcaagga 281
           ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 242 aaaaagacactgagcaccaaaccagcatcagcccctcaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space:   183056
Effective search space used:   183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)