Query= MSMg01no052_f15.b1 MSMg01no052_f15.b1 CHROMAT_FILE:
MSMg01no052_f15.b1 PHD_FILE: MSMg01no052_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:57 2005
(440 letters)
>mm_chr16_35184371_35185210
Length = 840
Score = 808 bits (418), Expect = 0.0
Identities = 433/438 (98%)
Strand = Plus / Plus
Query: 3 gaattcacccttctgccatttccattcacgtcttcagcaggttagatgaaacactgagtc 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcacccttctgtcatttccattcacgtcttcagcaggttagatgaaacactgagtc 262
Query: 63 cgatgagggctgtgttctttactgtgtccaaatgctcatttcttctggaagctctgtcac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgatgagggctgtgttctttactgtgtccaaatgctcatttcttctggaagctctgtcac 322
Query: 123 agacacaccagaaataatgtgctaccagcttcctgggcttcccccagcccatcaaactga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 323 agacacaccagaaataatgtgctaccagcttcctgggcttcccccagcccatcaagctga 382
Query: 183 catacaaaattagccctcacagtagggaggctggggggaatggagtaggtggtgaggtag 242
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 383 catacaaaattagccctcacagtagggaggttggggggaatggagtaggtggggaggtag 442
Query: 243 caatcttgggtgaacatgtgccggtgtgacctccaggaaccagagagcaggtgggcctag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caatcttgggtgaacatgtgccggtgtgacctccaggaaccagagagcaggtgggcctag 502
Query: 303 gctcccgagtgctctgtggttctgtgtccatgggtctggtggccagggcttgccaaagag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gctcccgagtgctctgtggttctgtgtccatgggtctggtggccagggcttgccaaagag 562
Query: 363 atggactgtcctgactcctgccctggctgtccctttgcccacaggagagtgggtagccac 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atggactgtcctgactcctgccctggctgtccctttgcccacaggagagtgggtagccat 622
Query: 423 gcttggttcaggatcttg 440
||||||||||||||||||
Sbjct: 623 gcttggttcaggatcttg 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_f15.g1 MSMg01no052_f15.g1 CHROMAT_FILE:
MSMg01no052_f15.g1 PHD_FILE: MSMg01no052_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:57 2005
(480 letters)
>mm_chr16_35285448_35286322
Length = 875
Score = 837 bits (433), Expect = 0.0
Identities = 467/481 (97%), Gaps = 7/481 (1%)
Strand = Plus / Minus
Query: 1 tggcacacggggaaggcagccaagcactcagtcccgtccttgggcatctctttgg-aaga 59
|||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 675 tggcacacagggaaggcggccaagcactcagtcccgtccttgggcatct-tttggcaaga 617
Query: 60 aggacaaagggtggacaatttggcgacggaagctgagctgtttgtgggagccgagaaggc 119
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 616 aggacaaagggtggacaatttggtgacgg-----gagctgtttgtgggagccgagaaggc 562
Query: 120 caacaaaataaagaagctgaacacagctgtctggcccttgttcacaagagcctgtgccca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caacaaaataaagaagctgaacacagctgtctggcccttgttcacaagagcctgtgccca 502
Query: 180 gagtgaccacagaattgccatatcagaacactgggacctctcaaaaactctggaaatcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtgaccacagaattgccatatcagaacactgggacctctcaaaaactctggaaatcag 442
Query: 240 acgggggaaatggatgcattctggtaaaaggagaattcttctcaagggaaaagagaagag 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgggggaaattgatgcattctggtaaaaggagaattcttctcaagggaaaagagaagag 382
Query: 300 aagagtagtccagtcagctgccgatcaataccagacaaggggatatggtaactgttagtc 359
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagcagtccagtcagctgctgatcaataccagacaaggggatatggtaactgttagtc 322
Query: 360 cctccaaccccagccagccttgcaggaactcagtaataagactgtccacattcagggaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccaaccccagccagccttgcaggaactcagtaataagactgtccacattcagggaag 262
Query: 420 ggcagtcaatattccctgctatctatccaatgaaaggataaccttttacaacattttgtt 479
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ggcagtcaatattccctgctatctatccaatgaaaggatagccttttacaacattttgtt 202
Query: 480 t 480
|
Sbjct: 201 t 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 875
Length adjustment: 10
Effective length of query: 470
Effective length of database: 865
Effective search space: 406550
Effective search space used: 406550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
