BAC Information

Click to search

BAC

Clone NameMSMg01-053A05
Chromosome16 (Build37)
Map Location 23,624,316 - 23,624,564
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018, Rtp4
Downstream geneEG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053A05.T7 (MSMg01no053_a05.b1)MSMg01-053A05.TJ (MSMg01no053_a05.g1)
ACCAG281350AG281351
length699698
length of high quality
(start - end)
---253 (123 - 375)
definitionCHROMAT_FILE: MSMg01no053_a05.b1 PHD_FILE: MSMg01no053_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:48 2005CHROMAT_FILE: MSMg01no053_a05.g1 PHD_FILE: MSMg01no053_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCCAACCTCCTGAAAATTTTGTACAAATGTCCTAATCTTTACTCACA
GAACACCTTTTTTTCATAATAAGTGCCTAACTCTATGCATAATTGGTATC
TCATGATCAAAACACTTGTTATTACAACATGTAATGAAAGGGTTTCTAGC
TTTATTTCTGATGCTGTGATAAAATAAAATATTCTGACCAACAGCAACTT
ATAATACAAAGCTGCTTATGTGTCCTACTACTTAAAGATCACAGCCCTTC
TGTCAGGAAAGTTATGGATTGAACTCAAGAACTTGACTAAGAAACAATGA
GGTAGTACTACATGCTGGCTCATCCAATATTACACTCACCTAACTTTTCC
ATACTACTCAGGACCATCTTCCCAGGTACTGCTGCTGCGCACAAAAAACT
GCCTGCACTATTTCATAATCAAGATAACGTCCTCTTATTAGTCCACATGT
CTATTCTGATCTACACAATCTTTTACATCAGGCTTTCCTTATATGAATTC
AGACTGTATTCAGTTGACTTCTGCTCCTATTTATCACTCTCCATATATCA
TCTATTGTTTACCCTTGTCTCGTTGGTCCATATTCCTAAAAACTCCCCGT
ACCCATTCTTTTTCCCTGCTAATTTCATTTTCCCATTTTCCCCTAATTT
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGACAATAAAGTGATCATGAAAAA
GACAGCCTTGCAGAAGCGCTGTCAAGGTTGATGGACTCTGGTAATGAAAT
GATTTCAACCTCTGCCACCCACACAGATCTGGCAAGAACAAAAGAACAAA
CGGGTGTTTGTGCTGATGCCTTGGCATAGTCAGAAAGCAGCTCAATGGTA
CTTGCCTCAGGCTCCTAAATCTAAATCACTTGGCAAATAGCTCACTCATC
CCCATGCCCTGCCACAAAGAATCTAGCTAATGTTGGCTCCGATGAAGAGC
CAAGAGATTGGAACTTTCCGGCAGCCCCAAATATACCCCAAGCACTGTAA
ACAAACCCTCCCAGGCTTTTGAGGTTCTGTGTGAAACTCATCACTCCCAA
CTGTTGAAAAAAATCCCTCAGCTTAAGCACTGCAAGGACTTGTAAGGGCA
CTGATGCCAACTTAGCACACCCACTTTTTGAATGCGGTTGGCTATATAGC
TCAAAGAGGCATCGCCGTTGACTTTTTTCTGACGGCTTCTCCCCCTTTGA
CACGTCCTGTCATTCCACCATTTACACATTAAAGCTGCAGGATTACTCAT
ATTCCCCGACCGCCGTATTGCGTCCACGTTATCATCTCGTGACCTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_a05.g1 MSMg01no053_a05.g1 CHROMAT_FILE:
MSMg01no053_a05.g1 PHD_FILE: MSMg01no053_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:48 2005
         (253 letters)



>mm_chr16_23624116_23624768
          Length = 653

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggttgatggactctggtaatgaaatgatttcaacctctgccacccacacagatctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caaggttgatggactctggtaatgaaatgatttcaacctctgccacccacacagatctgg 390

                                                                       
Query: 61  caagaacaaaagaacaaacgggtgtttgtgctgatgccttggcatagtcagaaagcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caagaacaaaagaacaaacgggtgtttgtgctgatgccttggcatagtcagaaagcagct 330

                                                                       
Query: 121 caatggtacttgcctcaggctcctaaatctaaatcacttggcaaatagctcactcatccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caatggtacttgcctcaggctcctaaatctaaatcacttggcaaatagctcactcatccc 270

                                                                       
Query: 181 catgccctgccacaaagaatctagctaatgttggctccgatgaagagccaagagattgga 240
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 269 catgccctgccacaaagaagctagctaatgttggctccgatgaagagccaggagattgga 210

                    
Query: 241 actttccgg 249
           |||||||||
Sbjct: 209 actttccgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)