BAC Information

Click to search

BAC

Clone NameMSMg01-054H01
Chromosome16 (Build37)
Map Location 33,229,055 - 33,229,611
singlet/doubletsinglet
Overlap geneOsbpl11
Upstream geneFbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791
Downstream geneSnx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054H01.T7 (MSMg01no054_h01.b1)MSMg01-054H01.TJ (MSMg01no054_h01.g1)
ACCAG282375AG282376
length821703
length of high quality
(start - end)
233 (185 - 417)557 (78 - 634)
definitionCHROMAT_FILE: MSMg01no054_h01.b1 PHD_FILE: MSMg01no054_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:37 2005CHROMAT_FILE: MSMg01no054_h01.g1 PHD_FILE: MSMg01no054_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTTTTTTATANTTTTTTTTCCATAATGACCCGGACCACCCGTCTTGC
GANGNTGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGCGAAG
GGGAGCCGCGGAATTCAGAGTTTTCAAAAAATCACTGAGAGATTCCCCAC
GGGGGCTCTTCTCCCCATCTTACTGATTCACCGTGCATATTGATCATCTC
TAGGACTAAACCAAGGAGGACAGTAAAAGTGTGACTCATTCGAGCCGGGC
GTGGTGGCAAATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGG
ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC
CAGGGCTATACAGGGAAACCCTGTCTTTTTTTTTTTGTGGAAAAAAGAAA
GAAAGAGAGAGAGAGGGAGGGAGGGCAGCCAGGGAGCCCCCCCCCCCAAC
CGAAACAACCAAGGCCCCCAACACCCCACCCCCCCGCCCCACACACCTCC
CCCCGGCCCGCCGCCAGCCCCAGCACCGGGCGCGCCGCGGCGGCAAGCAC
ACGAGCCACGGACGGGAGAACACACACGAGAACAGCAGCCGCCCCACACG
CAACCCAACCCACCAACCACGCCCCCCCGAACCCCACCCACAACAAACAC
ACGACCCCCCCGCCCCCCCCCCCCCAGCCCCACCCCACCCCGCTCCCGCC
CCCTCACCGCCCCCCTTTATCCGCCTCCACTACAAGCAACTCTATTGCCT
TGCCCCCATCCCTCTTTTTTTTTTTTTTTTTACATATTTATCCCCCTACC
GCCAATGTAGAGATATACATG
TCAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGGAGTATTCTGGTCTCCAGA
CAGGCCTGGAACGCATGATCCTCCTTGTTCAGCCTCCCTCGTGCTGAGAT
TAGAGATGTGTGTGTACACCACAGCTGGCTTCTAACAACAGGCCCATTCT
GCCCTCTTCTTTCTCTAGAGCACAGAGATATGACACATAATTGATTGACT
GCTTGCTCATGGTTCTAGAGACTGGACCCAGGGTCTCAAACATTCTAAGT
GAGCACTCACCACACACCAAAACTCAATCCCTGAAGTCTATTTTTTGGTT
ATTGGTTTTGTTTTTGAGATAGGTAAGACAAAACAGAAAAAGAGTCAAAG
AGTTATACTATCAAAGAGCAGAACAAGAGGCAGACATCATTAAAGCGCTC
TTACCGGTGCAGTTTGCCACCATAGAACGGCTTAGTATGAAAGGTGATGC
TGGCTGAGTATCCCGTCTTTGCACAGTTGACGCTGACTTTGCCCCCTAGT
TCTACCCACGGGACAGTGAGAATGGAACGGGCATATGCACAAGGCAGGGA
AAATGTGTACTCCTCTCCGTGCTCCAACAGACAAAGGACACCTGAGTGTG
AAGGCAGGAGGTTGGCTACAGCTCTTCAAAGACACAATTTAAAAATCTCC
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_h01.g1 MSMg01no054_h01.g1 CHROMAT_FILE:
MSMg01no054_h01.g1 PHD_FILE: MSMg01no054_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:37 2005
         (557 letters)



>mm_chr16_33228752_33229708
          Length = 957

 Score = 1062 bits (549), Expect = 0.0
 Identities = 555/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccggagtattctggtctccagacaggcctggaacgcatgatcctccttgttcagcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tccggagtattctggtctccagacaggcctggaacgcatgatcctccttgttcagcctcc 801

                                                                       
Query: 61  ctcgtgctgagattagagatgtgtgtgtacaccacagctggcttctaacaacaggcccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctcgtgctgagattagagatgtgtgtgtacaccacagctggcttctaacaacaggcccat 741

                                                                       
Query: 121 tctgccctcttctttctctagagcacagagatatgacacataattgattgactgcttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctgccctcttctttctctagagcacagagatatgacacataattgattgactgcttgct 681

                                                                       
Query: 181 catggttctagagactggacccagggtctcaaacattctaagtgagcactcaccacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catggttctagagactggacccagggtctcaaacattctaagtgagcactcaccacacac 621

                                                                       
Query: 241 caaaactcaatccctgaagtctattttttggttattggttttgtttttgagataggtaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caaaactcaatccctgaagtctattttttggttattggttttgtttttgagataggtaag 561

                                                                       
Query: 301 acaaaacagaaaaagagtcaaagagttatactatcaaagagcagaacaagaggcagacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 acaaaacagaaaaagagtcaaagagttatactatcaaagagcagaaccagaggcagacat 501

                                                                       
Query: 361 cattaaagcgctcttaccggtgcagtttgccaccatagaacggcttagtatgaaaggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cattaaagcgctcttaccggtgcagtttgccaccatagaacggcttagtatgaaaggtga 441

                                                                       
Query: 421 tgctggctgagtatcccgtctttgcacagttgacgctgactttgccccctagttctaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgctggctgagtatcccgtctttgcacagttgacgctgactttgccccctagttctaccc 381

                                                                       
Query: 481 acgggacagtgagaatggaacgggcatatgcacaaggcagggaaaatgtgtactcctctc 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 acgggacagtgagaatggaacgggcatatgcacaaggcagagaaaatgtgtactcctctc 321

                            
Query: 541 cgtgctccaacagacaa 557
           |||||||||||||||||
Sbjct: 320 cgtgctccaacagacaa 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)