BAC Information

Click to search

BAC

Clone NameMSMg01-054I15
Chromosome16 (Build37)
Map Location 83,037,676 - 83,038,319
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054I15.T7 (MSMg01no054_i15.b1)MSMg01-054I15.TJ (MSMg01no054_i15.g1)
ACCAG282449AG282450
length750685
length of high quality
(start - end)
316 (365 - 680)618 (58 - 675)
definitionCHROMAT_FILE: MSMg01no054_i15.b1 PHD_FILE: MSMg01no054_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:45 2005CHROMAT_FILE: MSMg01no054_i15.g1 PHD_FILE: MSMg01no054_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGGGGGNNNCNNNNNCCCCCNCNCGNCCCACCGAAACCCCCCCCC
GCNNNNNCAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
CGAGCCGCGGAANNCNCCTTTACANGACCGGAGGANCNNAGGCNNGGNCN
NNNAANAGGGNCCCACANNNCCGGGACCCNNNAAGCAGGACNGGNNNCAA
NNNNACANNNNNGANGAAGGNANCANNCANNNNANNNCANCNNCAAGGNC
NGAGANNCCNCNNCCAGGCCCGGNACNCGGNNAGNACAGNNNANNNNGAA
AAGAANNCCNCAGNNNNNCANNNCNAANANNCNCNGGGNNNGNGNNNNCN
NNANNGCNNANANTTTTTTTTTCTGTTCTTTTATAGCTTTGTTTCATTTA
ACTGTTCATTTTCCTTTTCCTTGCTTTTTAAAATGAACTTCTCTTTCTAA
ACCTAATTTTATCCTTTCTTCTTTAAAGACTTCTATCTTCTTCATAAAAG
GTGGTTTTAATGTGCTTTTCTTGTGCTTTCATATATATTTTATGTTGGAA
TATCTTTTGTCCTGCAATAATAAAATAGCTAGACTATGGTGAAGTTATAT
TGCTCTAGCTGTTACTGACTGTCATCAAAATTGTTTTTTGTTGTTTTTGT
TTTGTTTTGTTTTGTTTTGCTTTGTTTTGTTTTGATTTGTTTTGTTTTGT
TTTTCCTGGTGGCATCTTGTCTTCTGGATTTGAGTTGATTATAGCACTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTCCACGGTGTAAATGTATTTGCATCTCTTCATTAGGACCTG
GGCTTCTGGCATACAGTTTTTTTGTCCCACAGCTAGCTCTCAACCCTATT
TACAGGCATCTCAAATACCCTTTTTCCTTGGAATATACCCATATGCTTAC
TTATAAGCACAAACACACATAGACACACACACACACACACACACACACAC
ACACGCGCGCGCGCGCGCGCACGCGCACAGAGAGAGAGAGCAGCCCTACA
GTCACCTTGAAACTATCTCCATCTTCAAACTTAAATATATATATATATAA
TAAAAATCAGTAATAATGAAACTAACAATAGAATTGGAAAGTTATAAAAT
TTATTGAAATCCTTAAATTCACACTTTTGAAAACAATTATTTTTCTAACA
TTTAATTGTAACCACATTAAATCTATTTTACTGCGAAACATGAAATATGA
AAAATTAATCAATGAATACTTCTAAGTAAAATATTTTATTTATTATCAAC
TTCCATTTTTGTAGAAATGTAACATGACATTAATTCTAATTTAATAGATT
ATTCAAAGTGTAGTTTCATAAAATTATAGCTTTTCAGACCATTTCCTCTT
TAGTTTTTTTTTTTTTTTCTTTTAGGTCTTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_i15.g1 MSMg01no054_i15.g1 CHROMAT_FILE:
MSMg01no054_i15.g1 PHD_FILE: MSMg01no054_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:45 2005
         (618 letters)



>mm_chr16_83037510_83038526
          Length = 1017

 Score =  955 bits (494), Expect = 0.0
 Identities = 588/660 (89%), Gaps = 65/660 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccacggtgtaaatgtatttgcatctcttcattaggacctgggcttctggcatacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tctccacggtgtaaatgtatttgcatctcttcattaggacctgggcttctggcatacagt 226

                                                                       
Query: 61  ttttttgtcccacagctagctctcaaccctatttacaggcatctcaaataccctttttcc 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttttatgtcccacagctagctctcaaccctatttacaggcatctcaaataccctttttcc 286

                                                                       
Query: 121 ttggaatatacccatatgcttacttataagcacaaacacacatagacacacacacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttggaatatacccatatgcttacttataagcacaaacacacatagacacacacacacaca 346

                                                                       
Query: 181 cacacacacacacacacgcgcgcgcgcgcgcgcacgcgcacagagagagagagcagccct 240
           ||||||||||||||||              | ||| |||||||| |||||||||||||||
Sbjct: 347 cacacacacacacaca--------------cacacacgcacagaaagagagagcagccct 392

                                                                       
Query: 241 acagtcaccttgaaactatctccatcttcaaact-------------------------- 274
           ||||||||||||||||||||||||||||||||||                          
Sbjct: 393 acagtcaccttgaaactatctccatcttcaaactcaaatatatatatatatatatatata 452

                                                                       
Query: 275 ----------------------taaatatatatatatataataaaaatcagtaataatga 312
                                 || |||||||||||||||||||||||||||||||||||
Sbjct: 453 tatatatatatatatatatatatatatatatatatatataataaaaatcagtaataatga 512

                                                                       
Query: 313 aactaacaatagaattggaaagttataaaatttattgaaatccttaaattcacacttttg 372
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 513 aactaacaatagaattggaaagttataaaatttattgaattccttaaattcacacttttg 572

                                                                       
Query: 373 aaaacaattatttttctaacatttaattgtaaccacattaaatctattttactgcgaaac 432
           |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aaa--agttatttttctaacatttaattgtaaccacattaaatctattttactgcgaaac 630

                                                                       
Query: 433 atgaaatatgaaaaattaatcaatgaatacttctaagtaaaatattttatttattatcaa 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atgaaatatgaaaaattaatcaatgaatacttctaagtaaaatattttatttattatcaa 690

                                                                       
Query: 493 cttccatttttgtagaaatgtaacatgacattaattctaatttaatagattattcaaagt 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cttccatttttgtagaaatgtaacatgacattaattctaatttaatagattattcaaagt 750

                                                                       
Query: 553 gtagtttcataaaattatagcttttcagaccatttcctctttagttttttttttt-tttt 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 751 gtagtttcataaaattatagcttttcagaccatttcctctttagtttttttttttctttt 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space:   612256
Effective search space used:   612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)