BAC Information

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BAC

Clone NameMSMg01-054L06
Chromosome16 (Build37)
Map Location 56,460,665 - 56,461,116
singlet/doubletsinglet
Overlap genenone
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835
Downstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054L06.T7 (MSMg01no054_l06.b1)MSMg01-054L06.TJ (MSMg01no054_l06.g1)
ACCAG282566AG282567
length779707
length of high quality
(start - end)
431 (102 - 532)447 (73 - 519)
definitionCHROMAT_FILE: MSMg01no054_l06.b1 PHD_FILE: MSMg01no054_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:57 2005CHROMAT_FILE: MSMg01no054_l06.g1 PHD_FILE: MSMg01no054_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCGGCCCCCCCCCCCCNNATTACTACTCCAATATCCCAACCACCCCC
CTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTATGCTCCTTTGTATGTTCATGGGCATCTCTTTCTTT
AGATTTGGGAAGTTTTCTTCTATTATTTTGTTGAAGATATTTGCTGGCCC
TTTAAGTTGAAAATCTTCATTCTCATCAACTCCTATTATCCATAGGTTTG
GTCTTCTCATTGTGTCCTGGATTTCCTGGATGTTTTGAGTTAGGATCCTT
TTGCATTTGTATTTTCTTTGATTGTTGTGCTGATGTTCACTATGGAATCT
TCTGCACCTGAGATTCTCTCTTCCATCTCTTGTATTCTGTTGCTGATGCT
TGCATCTATGGTTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAGCATTG
CCTCACTTTGGGTTTTCTTCACTGTGTCTACTTCCCTTTTTAGGTCTCGT
ATAGTTTTGTTCATTTCCATCACCTGTTTGGATGTGTTTTCCTGTTTCTC
TTTAAGGACCTGTAACTCTTTTTTTTTTTTTTTCCCATTTTTTATTAGGT
ATTTCGCTCATTTACATTTGCAAGGGTATACCTAAAGTCTCCTATTAGTC
ACTTTTTTCTCTTTCTCCTACTTATTATAATACTTTTTTTTAGGTACCTG
AGAGTCCCCACTTGTACTGGACTTATATTAAACCTCTGATAAGCCCAAAT
GCTCCCACCTTTTTTTTTATGTGGTTGGC
AATGAAGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCAGATAAAATAATCCTTACCTTAGTT
TCTCTTATGTCTGGCAAACCTATTAAATTTTGTTCCAAGAATTTAACTAT
CGGTAACGCTTGTGACAGATAGCAAAAGAGGAAAAATAGAGAAAGGAAAA
AGGGAACCAACCTCGGTCAGAATCCTTACCTACAGTTTACAGTAGGCATA
TTGCTTTTACTGAGAACTGAATAGCAATGTGCTTCAGTATTATTCAAAGG
AACACTGAGTAAAAACAGGTTGTACCTGCTGCTCTATTGGACTACCAGTA
TATAAGTGACATCCGGTATTTATAAAAGGAGCAAGAAGAACTAAACTATT
CCATGACAAGTCAGGACTAACTACGGCTTAATTTTCAGGATCCATACTGC
CAAAGAGGGAAGCATATTTTCTAGAATCTTCAGTTTTGATGTTTCCTTCA
CTGACAGTTTCTGTTTCTGGCGGTAGTTGAGAGGCGATTGTGGGGCAAGT
TCTCCTATATGAACTCCCACAGTGTGTGGTTGAGCGAGCGATTACCGCCC
TCTTCCCTCTGTGCTGTTGAAGAAAGGGCTGCTGTATTTTAATTACAGCT
CCCTCTCTCCCGGAACCGGCCGAAAGGGTCTGTCGGTATTTATTTTCCCG
CCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_l06.g1 MSMg01no054_l06.g1 CHROMAT_FILE:
MSMg01no054_l06.g1 PHD_FILE: MSMg01no054_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:57 2005
         (447 letters)



>mm_chr16_56460465_56461316
          Length = 852

 Score =  770 bits (398), Expect = 0.0
 Identities = 437/452 (96%), Gaps = 5/452 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagataaaataatccttaccttagtttctcttatgtctggcaaacctattaaattttg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 652 tgcagataaaataatccttaccttagtttctcttatgtctggcaaatctattaaattttg 593

                                                                       
Query: 61  ttccaagaatttaactatcggtaacgcttgtgacagatagcaaaagaggaaaaatagaga 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 592 ttccaagaatttaactatcggtaatgcttgtgacagatagcaaaagaggaaaaatagaga 533

                                                                       
Query: 121 aaggaaaaagggaaccaacctcggtcagaatccttacct----a-cagtttacagtaggc 175
           ||||||||||| |||||||||| |||||||| |||||||    | |||||||||||||||
Sbjct: 532 aaggaaaaaggaaaccaacctcagtcagaattcttacctgctcaccagtttacagtaggc 473

                                                                       
Query: 176 atattgcttttactgagaactgaatagcaatgtgcttcagtattattcaaaggaacactg 235
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 472 atattgcttttactgagaactgaatagcaatatgcttcagtattattcaaaggaacactg 413

                                                                       
Query: 236 agtaaaaacaggttgtacctgctgctctattggactaccagtatataagtgacatccggt 295
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aataaaaacaggttgtacctgttgctctattggactaccagtatataagtgacatccggt 353

                                                                       
Query: 296 atttataaaaggagcaagaagaactaaactattccatgacaagtcaggactaactacggc 355
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 352 atttacaaaaggagcaagaagaactaaactcttccatgacaagtcaggactaactacggc 293

                                                                       
Query: 356 ttaattttcaggatccatactgccaaagagggaagcatattttctagaatcttcagtttt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttaattttcaggatccatactgccaaagagggaagcatattttctagaatcttcagtttt 233

                                           
Query: 416 gatgtttccttcactgacagtttctgtttctg 447
           ||||||||||||||||||||||||||||||||
Sbjct: 232 gatgtttccttcactgacagtttctgtttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 852
Length adjustment: 10
Effective length of query: 437
Effective length of database: 842
Effective search space:   367954
Effective search space used:   367954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)