BAC Information

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BAC

Clone NameMSMg01-054M16
Chromosome16 (Build37)
Map Location 91,640,701 - 91,640,949
singlet/doubletsinglet
Overlap geneGart
Upstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28
Downstream geneSon, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054M16.T7 (MSMg01no054_m16.b1)MSMg01-054M16.TJ (MSMg01no054_m16.g1)
ACCAG282631AG282632
length815785
length of high quality
(start - end)
248 (128 - 375)181 (77 - 257)
definitionCHROMAT_FILE: MSMg01no054_m16.b1 PHD_FILE: MSMg01no054_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:03 2005CHROMAT_FILE: MSMg01no054_m16.g1 PHD_FILE: MSMg01no054_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCCCCTNTTNNNACCNNCCTTCCTCCCGTCCAAAGGGAGNNCTTTTXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGGTTTCCTAGGGCTATACAGAGAAACCCTGTCTCA
GAAAAAAAAAAGAAGAAAGAAAAACAAACAGTAAAAAATGTTTACTTCTT
AGGCTTTCACAGGTTTATATTGAATTAATTATGGAAATATACTCTCAATA
AAATAACTCATTTCCTTTATACCACTAAAATAAGATCGGATTCTCCAGTA
TTTGAGAGGTAGAAGCTAAAGGGTCAGTTCAAAGCCAGCCTGGACTACGT
GGATCCAAAAGGAGAAGGAATTATTTTTTTGAAACATTCTGTGTGTGCTT
CTCTTGAATAATCTTGTCGACTGTATGTTGACGTCTTCACTATTGAGAAA
TCTCTAAGAGGAAGCACAGCAAGGCCAATGGCAATCCTCCTGATTCAGCC
TCAATAGTGCTAGGATTGTAGGAGAAACCCAACAATACCCTTTATAGTTC
CTAGAGTTTGGTAACCTCATTTTTGCGATAATACCATTTAATACTGAGTC
ATGCCCGCTTATATCTGTGCTTAGTTACTATGGTAAACCCGAATTCTAAC
ACTTGTTATTTAAACCCACATACAAGTAACGATATCGCTACCCCTCCTAA
TTTTAGAACAAGAGAGCGAATCACTGAGAATATTAATTTTTCTATTATTA
TAACTTCATTCCTCTAGACTCCTTAGACTACATCTTTCTCCCCGATACGA
GCTACTTATACTTCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACCTCACAGCCATATGTAAC
TTTACTTCATGGGAGGTGATAATCTCCACAGGGCCCTGCACACACACACA
CACACACACACACACACACACACACACACACACACACACACACATAAATA
TTTTTGAAAGCATTGTGATTGTGTTCATGCAGCGCTGGGACCAGTCTTTG
CTCTCATGGTTTTGGAAGATGCAAATAAAACACCCTAAGGCTTAGTCTTT
TGCTGTGTCCACAATATTTTTACCTCCAAAGGGGAGAAGCAATGTTGAGT
TAAGAGAGATAATACACACCCGGCCCCCACACAGCACAATCAAAGCATTA
TGCCTCACAGGTACACCACACACCCCTTTATTGCTACATACCCATGTATA
TGCCTCTACCGTTAATTTCTTGTAAACTTCCGACTGCCACTTTGTCATCA
TCTCATCTATAACAACTCACCTATTTAACTCATATTATGCTATCCCTCCA
AAACTACCATACACACACACACAACAGTCACACCACAAATAAAATCATTT
CTTTCTACACTTAAACTCCTTTTTTCTCTTACCAAAACCCCATATTATAC
CACCACACTCCATAANACACACTTAGCCAAAATACTGTCATCCTACTCTT
CAATCAATAATATATATGACAAACAAGCCCCTAATAAATACCTATCGATC
ACACGAAGAACAAAAATAAATTTTCTACTCACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_m16.b1 MSMg01no054_m16.b1 CHROMAT_FILE:
MSMg01no054_m16.b1 PHD_FILE: MSMg01no054_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:03 2005
         (248 letters)



>mm_chr16_91640580_91641230
          Length = 651

 Score =  443 bits (229), Expect = e-129
 Identities = 243/249 (97%), Gaps = 3/249 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatacagagaaaccctgtctcagaaaaaaa---aaagaagaaagaaaaacaaacagtaa 57
           |||||||||||||||||||||||||||||||   ||| |||||||||||||||| |||||
Sbjct: 370 ctatacagagaaaccctgtctcagaaaaaaaaagaaaaaagaaagaaaaacaaaaagtaa 311

                                                                       
Query: 58  aaaatgtttacttcttaggctttcacaggtttatattgaattaattatggaaatatactc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaaatgtttacttcttaggctttcacaggtttatattgaattaattatggaaatatactc 251

                                                                       
Query: 118 tcaataaaataactcatttcctttataccactaaaataagatcggattctccagtatttg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcaataaaataactcatttcctttataccactaaaataagatcggattctccagtatttg 191

                                                                       
Query: 178 agaggtagaagctaaagggtcagttcaaagccagcctggactacgtggatccaaaaggag 237
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggaggtagaagctaaagggtcagttcaaagccagcctggactacgtggatccaaaaggag 131

                    
Query: 238 aaggaatta 246
           |||||||||
Sbjct: 130 aaggaatta 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 651
Length adjustment: 9
Effective length of query: 239
Effective length of database: 642
Effective search space:   153438
Effective search space used:   153438
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)