Query= MSMg01no055_d14.b1 MSMg01no055_d14.b1 CHROMAT_FILE:
MSMg01no055_d14.b1 PHD_FILE: MSMg01no055_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:35 2005
(309 letters)
>mm_chr16_83608713_83609420
Length = 708
Score = 549 bits (284), Expect = e-161
Identities = 290/292 (99%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 18 gattttgaactcgtgtactaacttcagatactgacatatgccccatagaaacagctgagt 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gattttgaactcgtgtactaacttcagatactgacatatgccccatagaaacagctgagt 277
Query: 78 tcactgcaaacacagctgtaatgaacctactcccattaaaaaaaactgaataacttcttg 137
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 278 tcactgcaaacacagctgtaatgaacctactcccattaaaaaaa-ctgaataacttcttg 336
Query: 138 tcacaaactccctctcacatcccatgaaacacaactgttgggcgctgggtgtggggaaat 197
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcacaaactccctctcacatctcatgaaacacaactgttgggcgctgggtgtggggaaat 396
Query: 198 aaatgggtgggagagacccgcacccaccagagcttggggagactggatgagcagactcag 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaatgggtgggagagacccgcacccaccagagcttggggagactggatgagcagactcag 456
Query: 258 gagacttctttgggtccccacagaatggtgcaggatgggtgtcgggccatgt 309
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gagacttctttgggtccccacagaatggtgcaggatgggtgtcgggccatgt 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 708
Length adjustment: 9
Effective length of query: 300
Effective length of database: 699
Effective search space: 209700
Effective search space used: 209700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_d14.g1 MSMg01no055_d14.g1 CHROMAT_FILE:
MSMg01no055_d14.g1 PHD_FILE: MSMg01no055_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:35 2005
(491 letters)
>mm_chr16_83753201_83754091
Length = 891
Score = 913 bits (472), Expect = 0.0
Identities = 487/492 (98%), Gaps = 2/492 (0%)
Strand = Plus / Minus
Query: 1 ctacagcttttcattaaatgattcatgttttagctctctacttaattattatattgttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ctacagcttttcattaaatgattcatgttttagctctctacttaattattatattgttgt 632
Query: 61 atatatccctaaactggacatataaatgtgcttctcatttaaacacaagatttgatgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atatatccctaaactggacatataaatgtgcttctcatttaaacacaagatttgatgagt 572
Query: 121 actgatttttctctcaacaaacatcagtttagagatttttttcataatggctctctttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 actgatttttctctcaacaaacatcagtttagagatttttttcataatggctctctttta 512
Query: 181 aattattcaagaattttcacttatttattcttcaataa-ttttttttctcactcaaagaa 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 511 aattattcaagaattttcacttatttattcttcaataatttttttttctcactcaaagaa 452
Query: 240 tggctatttgtatatgagcgggcatttagctatataggtagatcattactggatacttaa 299
|||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 451 tggctatttgta-aggagcgggcatttagctatataggtagatcattactggagacttaa 393
Query: 300 ctgttaagttttcattaaaattataaatagaaaatagaaatatcaaatttcatcatggcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctgttaagttttcattaaaattataaatagaaaatagaaatatcaaatttcatcatggcc 333
Query: 360 aaatgaatgcaaggattttaaacataacctcttagcattaatacctaagaacattatttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaatgaatgcaaggattttaaacataacctcttagcattaatacctaagaacattatttt 273
Query: 420 gaactaggttaaatataggaaaacagtagacatacaaattaatgtttaaaaaaactgaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaactaggttaaatataggaaaacagtagacatacaaattaatgtttaaaaaaactgaag 213
Query: 480 tgcaaatatgta 491
||||||| ||||
Sbjct: 212 tgcaaatgtgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
