Query= MSMg01no056_l07.b1 MSMg01no056_l07.b1 CHROMAT_FILE:
MSMg01no056_l07.b1 PHD_FILE: MSMg01no056_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:26 2005
(286 letters)
>mm_chr16_49058049_49058734
Length = 686
Score = 530 bits (274), Expect = e-155
Identities = 283/286 (98%)
Strand = Plus / Plus
Query: 1 aagcaaggccaaaggttaatgaggctttagcttcaaataaaaaggccaacctctacatta 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aagcaaggccaaaggttaatgaggctttagcttcaaataaaaaggccaagttctacatta 260
Query: 61 aaatttccaaataaatttaaccttcaccctcattcttttttttatttctgggctgcatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttccaaataaatttaaccttcaccctcattcttttttttatttctgggctgcatga 320
Query: 121 tcattctctaaatttcagctaattggagatttggaagtcagattcacagtgtggtttggc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattctctaaatttcagctaattggagatttggaagtcagattcacagtgtggtttggt 380
Query: 181 atcaggtcacctacatgtcttaattccaaaattatttaacagtgcactataaaaactgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaggtcacctacatgtcttaattccaaaattatttaacagtgcactataaaaactgaa 440
Query: 241 aattgttctggtacccagaattagtcaacattagattttaatgtga 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattgttctggtacccagaattagtcaacattagattttaatgtga 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no056_l07.g1 MSMg01no056_l07.g1 CHROMAT_FILE:
MSMg01no056_l07.g1 PHD_FILE: MSMg01no056_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:26 2005
(472 letters)
>mm_chr16_49199341_49200212
Length = 872
Score = 830 bits (429), Expect = 0.0
Identities = 462/473 (97%), Gaps = 2/473 (0%)
Strand = Plus / Minus
Query: 1 agaaggatcagcctgaacttgtttaagccaaccagagcccttaacctcctgctgcctc-a 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 672 agaaggatcagcctgaacttgtttaagccaaccagagcccttaacctcctgctgcctcaa 613
Query: 60 cacacagggtgagcctcagaaagactaggaagtctgaatgttaggataggaagaagccta 119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 612 cacacagggtgagcctcagaaagactaggaagtctgaatgataggataggaagaagccta 553
Query: 120 tatggcgattcggggagagttctggttttttaaaaagagagagaatagacatggagagag 179
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 552 tatggcgattcggggagagttctgg-tttttaaaaagagagagaatagacatggagagaa 494
Query: 180 ttctgagaatcattgaggttctctgtcaacaatgagaggtgaatataaacgctgaagcct 239
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttctgaggatcattgaggctctctgtcaacaatgagaggtgaatataaacgctgaagcct 434
Query: 240 acatgctgaggatgccaaacgagcaggccctgctcctttggtggcgctggacccactctg 299
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 433 acatgcagaggatgccaaacgagcaggccctgctcctttggtggcgctggacccaccctg 374
Query: 300 cgtgagtgtggttggatagagaggcagagccaccgagaatcacacagaacaggatttatt 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgtgagtgtggttggatagagaggcagagccaccgagaatcacacagaacaggatttatt 314
Query: 360 gtcagacatcatctttacacagttgtggctgctgtgcctcaagtggctgcagtgagtcgc 419
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 313 gtcagacatcatctttacacagttgtggccgctgtgcctcaagtggctgcagtgagtcac 254
Query: 420 acagggatgggtggggggctttgccttcaatgaggatggaacaatcctgtaag 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acagggatgggtggggggctttgccttcaatgaggatggaacaatcctgtaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
