BAC Information

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BAC

Clone NameMSMg01-056N03
Chromosome16 (Build37)
Map Location 90,455,431 - 90,455,852
singlet/doubletsinglet
Overlap geneHunk
Upstream gene5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056N03.T7 (MSMg01no056_n03.b1)MSMg01-056N03.TJ (MSMg01no056_n03.g1)
ACCAG284132AG284133
length710711
length of high quality
(start - end)
498 (71 - 568)425 (74 - 498)
definitionCHROMAT_FILE: MSMg01no056_n03.b1 PHD_FILE: MSMg01no056_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:34 2005CHROMAT_FILE: MSMg01no056_n03.g1 PHD_FILE: MSMg01no056_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCGGA
ATTCACAGTTCTTCTCAAGGTCAGCAGCAGCAGCTCGGTCCACTCACAAA
CACCAGCAGTCTAATGCGATATAGCAAACACAATTCAGCGGTGGTAGCAG
TACCCAACAGAGACAGCCAGGCCTCAGTGTCCACAGGAGGGACCAGCAGG
AACACTAGGGGACACTCTCAGCTGTGCCTCTCTCAGGGAAGCAAAGATCA
GCAAAGTTGAAAGACCCAAGCGTTGCAGGACTAGCTGTCCCAGCAAAGCC
AAGTTCTGTCTCCGTCACTCTGTCACTCTGTGGAGACCTATTTATACCTT
CCAAACATCGTGCGTCCACAACACATGCCTTGCCTCAGCCTGTGCATCCA
ATCAGCCCAAGTCCTCAGAGTCCAGACTGATGGAACTCAACTATATCACA
GACTGTGGACCAATACGTGTGTGTCATTAGCAAAGAATCCTTCATGACGT
TGGGCAGTGACGGCGCACACCTTTAATCCCAGCACTTGGAAGGCAGAGGC
AGGAAGATTTCTGAGGTCAGCCTGGTCTACAGAGCGAGTTCCAAGACAGT
CAGGGCTACACAGAGAAACCCTGTCTTGAAAACCAAAAATTAAATAAAAA
AAAAGAATCCTTCATCACGTGTCCTTTCACATGATTGCTTTAGCAGAACA
TCCTCTTCTC
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATCCAGCAACCGTTGACACTTTATC
TCTCAGTGCTGTGACCAAGACACAGGGTCCTGCTCCCAAGGGAAGGTTCT
CTCCAGTTCCCTTTGCCCGTGGCCACCAACTCTCTGTCTGTCAAGAAGCA
GGGACTCTGTGTCTGTCTGGGGTAGTGGTGGCAGGTGACACTGGGGAAGA
AGAAAGGCGATGATGTTGGGCCACGATGCCTAGATAGCTCCGGAGCTGTT
GTCTGTGGCTGGCAAATGTCATCCTTCACTCTTCTACACTGGTAGACGGG
TCTCTCCTGGGGTCCCTCAACATCTGTATTAGTGTCCCCTTGATGGAATT
ATTCTCTCTACGAAGATAATGCACACTGTAGGCACTCGCAAGATCTCTAC
AAGGTCAGGTGACCCTTCTCAGAGGTTGCTGGCAGGGAGACCCTGTAGCA
GAACATGTAATGTGGAGAATCTCACTCATGCCAGGGGAGAAGAGTCCCCA
GGAGCAAGAGGGCAAGTTGCAGTACCCAAGAATCTGCTGAGTGCTTCTGT
GTCTTTTTTGCTGGGGCCTAAAAAGAGATCTCCTTTCCTGCCATTGCTGG
CAGAGCCGGCTACTGTGACTCACTTGCCCACTTCTAAGAACTGAATTGTG
TCTCATAGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_n03.g1 MSMg01no056_n03.g1 CHROMAT_FILE:
MSMg01no056_n03.g1 PHD_FILE: MSMg01no056_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:34 2005
         (425 letters)



>mm_chr16_90455231_90456055
          Length = 825

 Score =  770 bits (398), Expect = 0.0
 Identities = 416/422 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatccagcaaccgttgacactttatctctcagtgctgtgaccaagacacagggtcctgc 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 atatccagcaaccgttgacactttgtctctcagtgctgtgaccaagacacagggtcctgc 260

                                                                       
Query: 61  tcccaagggaaggttctctccagttccctttgcccgtggccaccaactctctgtctgtca 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tcccaagggaaggttctctccagttccctttgcccatggccaccaactctctgtctgtca 320

                                                                       
Query: 121 agaagcagggactctgtgtctgtctggggtagtggtggcaggtgacactggggaagaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaagcagggactctgtgtctgtctggggtagtggtggcaggtgacactggggaagaaga 380

                                                                       
Query: 181 aaggcgatgatgttgggccacgatgcctagatagctccggagctgttgtctgtggctggc 240
           |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 381 aaggcgatgatgttgggccacgatgcctggatagatccggagctgttgtctgcggctggc 440

                                                                       
Query: 241 aaatgtcatccttcactcttctacactggtagacgggtctctcctggggtccctcaacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgtcatccttcactcttctacactggtagacgggtctctcctggggtccctcaacat 500

                                                                       
Query: 301 ctgtattagtgtccccttgatggaattattctctctacgaagataatgcacactgtaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtattagtgtccccttgatggaattattctctctacgaagataatgcacactgtaggc 560

                                                                       
Query: 361 actcgcaagatctctacaaggtcaggtgacccttctcagaggttgctggcagggagaccc 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcgcaagatctctacaaggccaggtgacccttctcagaggttgctggcagggagaccc 620

             
Query: 421 tg 422
           ||
Sbjct: 621 tg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)