BAC Information

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BAC

Clone NameMSMg01-057A07
Chromosome16 (Build37)
Map Location 32,408,534 - 32,409,077
singlet/doubletsinglet
Overlap geneTm4sf19
Upstream geneBdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7
Downstream gene0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4, Zfp148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057A07.T7 (MSMg01no057_a07.b1)MSMg01-057A07.TJ (MSMg01no057_a07.g1)
ACCAG284280AG284281
length699695
length of high quality
(start - end)
564 (46 - 609)543 (74 - 616)
definitionCHROMAT_FILE: MSMg01no057_a07.b1 PHD_FILE: MSMg01no057_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:49 2005CHROMAT_FILE: MSMg01no057_a07.g1 PHD_FILE: MSMg01no057_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCG
GAATTCTTTGTTTACCTCTGAACCCCATTTTTAATGGGGTTAGTAAATTT
TTTAAATCATTTTTTATTATTATAAGTAAGTACACTGTTGCTGTCTTCAG
AGGCACCAGCAGAGGGCATCAGATCTCATTATGGGTGGTTGTGAGCCACC
ATGTAGTTGCTGGGATTTGAACTCAGGATCTTCAGAACAGTAGTCAGTGC
TCTTACTCACTGAGCCATTTCACCAGCCCGTAATTGATATAAAATTGAAG
TTAAAATCTCTTACATTGGTACAGATTTTATATATTGATATAGAATCAAG
GTTTTCATTGGTATGAATCTATATATTGATACAAAATTTAAAATTAATAT
TGTTACTCTTAGATAGGCATTGTGCCTTTACAACTCATTTAAAAACAAGA
TGATTAGCTGGGCATGGTGGCGCACGCCTTTACTCCCAGCACTTGAGGCA
GAGGCAGGTGGATTTCCGAGTTCGGGGTCAGCCTGGTCTACAGAGTGAGT
TCCAGGACAGCCAGGGATACACAGAGAAACTGTCTCGAAAAATAAAAACA
AACAAACAAACAAGCAAACAAATGATGACAGCGAATTTTATCTAATTGAC
GGATATAATGGACTAGATGTTAACTGTATATCTTACTTTGTAATTTACC
TCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTAAAAGAATGGCACTATCTCCATCT
TGGTCAGCCTCCTGGATGATCCTGTCTGCAATACTGCCTAGCTGCTCATC
CGAGATATTCACTCCAACCATCATTCTCAGTACCTGTAACAGCTCATCAC
AGGAGATCTTGTCATCTTTATCCAAATCATAGAGTCTGAAAGCAAAGTGC
AGCTTGTTGCTCCGGCTGTTGAGGGGTTCCGGGCCATTCACATCTTTGCT
CTTTTCGTTATCCTCAATGGGTTGGAAATGAGCCAATGTTCTCATGAATC
CTCGGAAGTTTACCTGATCCTCTCCCTCTGAGAAGAAGGCATTGATGATC
CGGTCCCCCAGTGGCCTGATGGCAAGTTCTGGAATCCTCTGGAAATCTTC
CCGGCTGAGAGTCCCGTTCTCCCCTTTGTCCAGGCTAGTGAAGAGGCTGT
ACAGGCGCGTGATCTGACTGTGGGAAAAGTCGGTAGCCCAATTCCCAACA
ATGGTTCAGTCGCAGCTGTGAATGGAAGTCCAAGGATCTAGCAGCTACTC
AGTCTCACACAGCAAGCAGGCGATGGAGCAAGAGCCCCAGCTTCTCTGTC
TTAACATGTGGCCAACTTTTATGAGATTCTAAAAGATTTATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_a07.g1 MSMg01no057_a07.g1 CHROMAT_FILE:
MSMg01no057_a07.g1 PHD_FILE: MSMg01no057_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:50 2005
         (543 letters)



>mm_chr16_32408423_32409366
          Length = 944

 Score =  936 bits (484), Expect = 0.0
 Identities = 529/544 (97%), Gaps = 1/544 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaaaaga-atggcactatctccatcttggtcagcctcctggatgatcctgtctgcaat 59
           |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 655 tgtaaaagatgtggcactatctccatcttggtcagcctcctggatgatcttgtctgcaat 596

                                                                       
Query: 60  actgcctagctgctcatccgagatattcactccaaccatcattctcagtacctgtaacag 119
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 actgcccagctgctcatctgagatattcactccaaccatcattctcagtacctgtaacag 536

                                                                       
Query: 120 ctcatcacaggagatcttgtcatctttatccaaatcatagagtctgaaagcaaagtgcag 179
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 535 ctcatcacgggagatcttgtcatctttatccaaatcatagagtctaaaagcaaagtgcag 476

                                                                       
Query: 180 cttgttgctccggctgttgaggggttccgggccattcacatctttgctcttttcgttatc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cttgttgctccggctgttgaggggttccgggccattcacatctttgctcttttcgttatc 416

                                                                       
Query: 240 ctcaatgggttggaaatgagccaatgttctcatgaatcctcggaagtttacctgatcctc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctcaatgggttggaaatgagccaatgttctcatgaatcctcggaagtttacctgatcctc 356

                                                                       
Query: 300 tccctctgagaagaaggcattgatgatccggtcccccagtggcctgatggcaagttctgg 359
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 355 tccctctgagaagaaggcattgatgatccggtcccccagtgggttgatggcaagttctgg 296

                                                                       
Query: 360 aatcctctggaaatcttcccggctgagagtcccgttctcccctttgtccaggctagtgaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aatcctctggaaatcttcccggctgagagtcccgttctcccctttgtccaggctagtgaa 236

                                                                       
Query: 420 gaggctgtacaggcgcgtgatctgactgtgggaaaagtcggtagcccaattcccaacaat 479
           | | |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 235 gcgactgtacaggctcgtgatctgactgtgggaaaagtcggcagcccaattcccaacaat 176

                                                                       
Query: 480 ggttcagtcgcagctgtgaatggaagtccaaggatctagcagctactcagtctcacacag 539
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 175 ggttcagttgcagctgtgaatggaagtccaaggatctagcagttactcagtctcacacag 116

               
Query: 540 caag 543
           ||||
Sbjct: 115 caag 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space:   497822
Effective search space used:   497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)