Query= MSMg01no059_a09.b1 MSMg01no059_a09.b1 CHROMAT_FILE:
MSMg01no059_a09.b1 PHD_FILE: MSMg01no059_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:25 2005
(681 letters)
>mm_chr16_53957322_53958403
Length = 1082
Score = 1214 bits (628), Expect = 0.0
Identities = 667/680 (98%), Gaps = 4/680 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgtattgctctatttattatttttaaggcatgctaaaaataagctagcaaatt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtattgctgtatttattatttttaaggcatgctaaaaataagctagcaaatt 264
Query: 65 atttggtctgtagattatgaaaaaagaataggggtgttttcagtggtcctctgaatacta 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttggtctatagattatgaaaaaagaataggggtgttttcagtggtcctctgaatacta 324
Query: 125 cggagagataccagttatttgattatatcttgcagaatacagagaatgaataaaatctct 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 cggagagataccagttatttgattatatcttgcaggatacagagaatgaataaaatctct 384
Query: 185 aaaatgtggaaacatttttaaattgaagtccttttaatgctgtctaacaacattatattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaatgtggaaacatttttaaattgaagtccttttaatgctgtctaacaacattatattt 444
Query: 245 gagaagaatagaatcaagaggtctaaagttgaaagcaattagaaattaatgaaggtaggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 gagaagaatagaatcaagaggtctaaagttgaaagcaattagaaattaatgaaagtaggc 504
Query: 305 agtgacttcaaaatctctagaagaaaaa-cattttttttctcaccaattcagggtatagc 363
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 agtgacttcaaagtctctagaagaaaaaacattttttttctcaccaattcagggtatagc 564
Query: 364 tgctatgattgcttcaattattccactgtatctttatttggaaatcttttcctatttctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 tgctatgattgcttcaattattccactgtatctttatttggaaatcttttcctatttttt 624
Query: 424 tctatctgcaataactgggatggtctagaatttattaggtaagcgacagcagcttgtgat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctatctgcaataactgggatggtctagaatttattaggtaagcgacagcagcttgtgat 684
Query: 484 ggcaatcctactgcctctgttttccatgtgctgagatttcagatgtttcatattagattt 543
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 ggcaatcctactgcctctgttttccatgtgctgtgatttcagatgtttcatattagattt 744
Query: 544 atactctatttttt-aatatttttattacatattttcctcaattacatttccaatgctat 602
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctactttatttttttaatatttttattacatattttcctcaattacatttccaatgctat 804
Query: 603 cccaaaagtcccccataccttcccccccacttccctacac-acccattcccatttttttg 661
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 805 cccaaaagtcccccataccttcccccccacttccctac-ctacccattcccatttttttg 863
Query: 662 gccttggcgttcccctgtac 681
||||||||||||||||||||
Sbjct: 864 gccttggcgttcccctgtac 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space: 719312
Effective search space used: 719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_a09.g1 MSMg01no059_a09.g1 CHROMAT_FILE:
MSMg01no059_a09.g1 PHD_FILE: MSMg01no059_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:25 2005
(658 letters)
>mm_chr16_54043649_54044706
Length = 1058
Score = 1141 bits (590), Expect = 0.0
Identities = 641/658 (97%), Gaps = 2/658 (0%)
Strand = Plus / Minus
Query: 1 tcaaaagaaatggaagacctataattaatcatgccaaagctcagaatctgttgacaccat 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 857 tcaaaagaaatggaagacctataattagccatgccaaagctcagaatctgttgacaccat 798
Query: 61 ctaatatttttatatatgtaatgcattaaaatgtagtttaataaaatgaatgcccagcta 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctaatgtttttatatatgtaatgcattaaaatgtagtttaataaaatgaatgcccagcta 738
Query: 121 tgaaggagaaagatgatgatataagatagagcaaacaaacatgtaagagctctaatgata 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 737 tgaaggagaaagatgatgatataagatagagcaaacaaacatgtaagacctctaatgata 678
Query: 181 tgtatgttatatttgaagaggcaaattattaatatttccaaatactgaaagtttgaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgtatgttatatttgaagaggcaaattattaatatttccaaatactgaaagtttgaaacc 618
Query: 241 ctctagttgatgcagttatgatagctgtgaaagaatgattagaatatgtgtatgtgaaag 300
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 617 ctctagttgatgcagttgcgatagctgtgaaagaatgattagaatatgtgtgtgtgaaag 558
Query: 301 agaaaatagctggagttattattacaaatgtatcttctgcaaatgaatcaagaagatcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 557 agaaaatagctggagttattattacaaatgtatcttctgcaaatgaatcaaaaagatcct 498
Query: 361 gatacaatgaattatttaaagagaaagaattataggaaaaacaggagaaaaatacatctg 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 497 gatacaatgaattatttaaagagaaagaattataggagaaacaggagaaaaatacatctg 438
Query: 421 actgacattctgagtaacacctgagtgaattccaaaagagacaagcacaaagacatagaa 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 actgacattctgggtaacacctgagtgaattccaaaagagacaagcacaaagacatagaa 378
Query: 481 tccaattctaactgacacatgaagatttatcagttgctttgaagtattcatttttcgtgt 540
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 377 tccaattctaactgacatatgaagatttatcagttgttttgaagtattcatttttcgtgt 318
Query: 541 attatttgaccacatgggtaaatgtatttaccattta-cgtgaaagtgatttgtttgtat 599
||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||
Sbjct: 317 attatttgaccacatggataagtgtatttaccatttatc-tgaaagtgatttgtttgtat 259
Query: 600 ggtttttattattaagaagtcattagtcttcctgtcaataaaaagtgctcaattcccc 657
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggtttttattattaagaaatcattagtcttcctgtcaataaaaagtgctcaattcccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
