BAC Information

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BAC

Clone NameMSMg01-061H22
Chromosome16 (Build37)
Map Location 13,734,452 - 13,734,760
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10
Downstream geneA930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061H22.T7 (MSMg01no061_h22.b1)MSMg01-061H22.TJ (MSMg01no061_h22.g1)
ACCAG287691AG287692
length742769
length of high quality
(start - end)
346 (73 - 418)326 (63 - 388)
definitionCHROMAT_FILE: MSMg01no061_h22.b1 PHD_FILE: MSMg01no061_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:29 2005CHROMAT_FILE: MSMg01no061_h22.g1 PHD_FILE: MSMg01no061_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCCACAAATTTTCCATAGGACTCATCAAGTTAAAGGTCAATATGAA
CTGTTATGGCTTGAGTTAGAGGTGACCACCAGGCAGAAGCTCCTGCGCCT
GTATATGAGCTCACTGTGGTTTTGTGGGTGACACTGAAGAATGCTACTAA
TAAGCCAAAGAGTTATGATTATAACACCCATGCTCTGTTATCTCAATGTT
CAAAACTTCCCCCGTTCACCACCTCTCTTACCTCACTCAGGACCAATCAG
CTTTTTTTTTTTTTAAAGATTTATTTATTTGTTATATGTAAGTACACTGT
AGCTATCTTCAGACACACCAGAAGAGGAAGTTAGATCTCATTACGGATGG
CTGTGAGCCACCATGTGCTTGCTGGGATTTGAACTCAGAACCTTTGGAAG
AGAAGTCGGGTGCTCTTACCTGCTGAGCCATCTCACCAGCCCCCCCAATC
AGCTTTTATAGGACAGTTGATAATACTCTGTCTAGTAAGCTAAAATGTAA
TACTGCTCCCCCTTGCCTTTAAATGTTTGAACCTTGGTTTTTCCTATTAA
AAGTCTGCTTGCACGACATATGTTTACCCCCATTAACTCATTCTTTTTCG
TGAACCTGGTTCTGATCAGCATCTAGGAGTACTAACAATAATTTTGGTCC
AGATTTGACTGTATCATTACCCCTAATGCCTTTTTGTTACTG
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAAAGGCAGCCTTGTCTATAGAGTGAGTTCCAGGACTAC
ACAAAGAAATACTGTGTTGAAAAACAAACAGGAAAGATTTCTTTCCAATA
CCTTATAACTACAACAGACTAAGTGCTTAGCCTTCACTGGGACCAGCAGT
TCTGAGACTGAAGGAATGATAGACACCGACACTTGCTACCTCTAAAAGCT
TCTGCTAAAGAGATACCTAGGTCACTTTCACCACATTTCATTGGTCAAGT
GACCCAACTTCCAGCCTGCAAGGTGAAATGATCAGTGTTATTAATGATAA
GGCATACAAGCTACCCAAACACTGGGGGGGAGGGTGGGGGTTTTTCCCTT
TTTTTTTTCCCCCCCCCCCCCTTTTCCCTTCCCCTTTTTTCCCCTTTTTC
CCGTTTTTTCCTCTTTTCCCCCTTCCCTCTTCTTTCCCCCTCTTCTTCCT
CCTTTTCCTCCCCTTTTCCTTTCCCCTCTTTCTCCTTTTTTTTCTCCTCC
CTCCCTTCCCCTTTCCCCTTTTCTCTCTTTTCTTCTTTTTTTCTCCTTTT
TCCTTTCCTTTCCCCCCCTCTCCTCCCCTTCTCTCCCCTTCTTCCCTTTT
TTCCCTCCTTTTTTTCCTTTCCTTTCCCCTCCCTTTATTTTACCCTCCTT
TTCTTCCTCATCCACTCTTCCTTCCCTTTTTCTCCTCTCTTCCCCTTTCT
CTTTTTCCCTATCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_h22.g1 MSMg01no061_h22.g1 CHROMAT_FILE:
MSMg01no061_h22.g1 PHD_FILE: MSMg01no061_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:29 2005
         (326 letters)



>mm_chr16_13734327_13735052
          Length = 726

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 10  cttgtctatagagtgagttccaggactacacaaagaaatactgtgttgaaaaacaaacag 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cttgtctatagagtgagttccaggactacacaaagaaatactgtgttgaaaaacaaacag 375

                                                                       
Query: 70  gaaagatttctttccaataccttataactacaacagactaagtgcttagccttcactggg 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaaagatttctttccaataccttataactacaacagactaagtgcttagccttcactggg 315

                                                                       
Query: 130 accagcagttctgagactgaaggaatgatagacaccgacacttgctacctctaaaagctt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 accagcagttctgagactgaaggaatgatagacaccgacacttgctacctctaaaagctt 255

                                                                       
Query: 190 ctgctaaagagatacctaggtcactttcaccacatttcattggtcaagtgacccaacttc 249
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgctaaagagatacctaggtccctttcaccacatttcattggtcaagtgacccaacttc 195

                                                                       
Query: 250 cagcctgcaaggtgaaatgatcagtgttattaatgataaggcatacaagctacccaaaca 309
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cagcctgctaggtgaaatgatcagtgttattaatgataaggcatacaagctacccaaaca 135

                    
Query: 310 ctggggggg 318
           |||||||||
Sbjct: 134 ctggggggg 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)