Query= MSMg01no062_g05.b1 MSMg01no062_g05.b1 CHROMAT_FILE:
MSMg01no062_g05.b1 PHD_FILE: MSMg01no062_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:56 2005
(765 letters)
>mm_chr16_50673650_50674817
Length = 1168
Score = 1365 bits (706), Expect = 0.0
Identities = 755/776 (97%), Gaps = 12/776 (1%)
Strand = Plus / Plus
Query: 1 ttctccaccccc-tcatttgagaataaaatgttccttagactgggggaactgaaccccaa 59
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 194 ttctccacccccctcatttgagaataaaatgttctttagactgggggaactgaaatccaa 253
Query: 60 aaaaaaaa------tcaaaaccaacaaacctgttcaagtgagtcacaacctaagaactgc 113
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaaaaaaaaaaaatcaaaaccaacaaacctgttcaagtgagtcacaacctaagaactgc 313
Query: 114 ctgtgggcagctcataataaaatgcattactactgctaaagcatcaggatattcttttta 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctgtgggcagctcataataaaatgcattactactgctaaagcatcaggatattcttttta 373
Query: 174 aaaaaacaggatacactttgtattctgtggtaattactatgtgttcttgaaacagaagtt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaaaacaggatacactttgtattctgtggtaattactatgtgttcttgaaacagaagtt 433
Query: 234 gaaaaaaaaa---ggtgtacagcttattcctgacctgctgactcacctgaattttaatgt 290
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaaaaaaaaaaaaggtgtacagcttattcctgacctgctgactcacctgaattttaatgt 493
Query: 291 ctgtagataatgttggattctgttttctgaaagagaacatcacagattttagacacaaat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctgtagataatgttggattctgttttctgaaagagaacatcacagattttagacacaaat 553
Query: 351 gaaggtgatctagtcatggccctcaaatttgttacatcaccccagtcattgtcacttcaa 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaaggtgatctagtcatggccctcaaatttgttacatcaccccagtcattgtcacttcaa 613
Query: 411 taac-tggtctcccatctagttcctattattcctgaagtgcagtgatgaagtaagtttgg 469
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taccatggtctcccatctagttcctattattcctgaagtgcagtgatgaagtaagtttgg 673
Query: 470 gattatgcagcaacaggtagctcctgtctcagtagaggccaaagtgtccagctcaaagca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gattatgcagcaacaggtagctcctgtctcagtagaggccaaagtgtccagctcaaagca 733
Query: 530 ttcttagggaatcctcctggctcagataagactttctggaaagctctgaggaggtatgct 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttcttagggaatcctcctggctcagataagactttctggaaagctctgaggaggtatgct 793
Query: 590 ttaaaggagacgatagcatttgcttctggtctttatggctaacttcaagtgaaggtgtca 649
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 794 ttaaaggagacgatagcatttgcttctggtctttatggctaacatcaagtgaaagtgtca 853
Query: 650 gttggtaatggataagaggactcatcagccacatcagcaaaacagacatttctatccatg 709
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 854 gttggtaatggataagaggactcatcagccacat-agcaaaacagacatttctatccttg 912
Query: 710 tacattctggtaccctcagagaaatctaacagtaagagagggtgtataaataataa 765
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 913 tacattctggtaccctcagagaactctaacagtaagagagggtgtataaataataa 968
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 765
Length of database: 1168
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1158
Effective search space: 874290
Effective search space used: 874290
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_g05.g1 MSMg01no062_g05.g1 CHROMAT_FILE:
MSMg01no062_g05.g1 PHD_FILE: MSMg01no062_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:56 2005
(792 letters)
>mm_chr16_50763925_50765116
Length = 1192
Score = 1400 bits (724), Expect = 0.0
Identities = 775/792 (97%), Gaps = 1/792 (0%)
Strand = Plus / Minus
Query: 1 accccagactctttgcaggcccgagacccctgacccagatccggctgtcccatgcctcag 60
||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| |||||
Sbjct: 809 accccagactctttggaggcccgagacccctgagccagctccggctgttccatgtctcag 750
Query: 61 actgcacttccctacggcccagcccacgcccagcaatggtgtggggtaaggccagtccaa 120
||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct: 749 actgcacttccctacagcccagcacacacccagcaatggtgtggggtaagcccagtccaa 690
Query: 121 cttcctgcatactgcctccccaggcagtggtgtttgaccgcgggacccacaaccctacaa 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctccctgcatactgcctccccaggcagtggtgtttgaccgcgggacccacaaccctacaa 630
Query: 181 aagtaaacttaaatttataatcagtgcagaaagagcttcctagaaacgggtgagtttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aagtaaacttaaatttataatcagtgcagaaagagcttcctagaaacgggtgagtttgat 570
Query: 241 gacttgattccctgtactacaattcaccatgggcaactgaaacacaatggatacgatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 569 gacttgattccctgtactacaattcaccatgggcaactgaaacacaatggatatgatgtt 510
Query: 301 tctcacagtccaagactaaaagaaaaatcgggaattcactctaaaacgggacgacaactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tctcacagtccaagactaaaagaaaaatcgggaattcactctaaaacgggacgacaactt 450
Query: 361 tgaggctgtctctggagtaagtgttgtcaattgacatcagtttggagcagataggtaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgaggctgtctctggagtaagtgttgtcaattgacatcagtttggagcagataggtaaac 390
Query: 421 atgactcagtgcccgagctacaaaattgcacaactttctcaaacacattttcacctgtgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atgactcagtgcccgagctacaaaattgcacaactttctcaaacacattttcacctgtgc 330
Query: 481 cctaagcagtttttcttttgttaataatttatctttatatttgaaaatctcatatatttc 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 329 cctaagcagtttttcttttgttaataatttatttttatatttgaaaatctcatatatttc 270
Query: 541 ctcccccctgttttgtttgtttactaacccactaattgcaattagtgctgttcatatgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctcccccctgttttgtttgtttactaacccactaattgcaattagtgctgttcatatgtg 210
Query: 601 catgggtatagggccatcctcaggagcgttggaaaacttctagtgtctacatccttaaga 660
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 209 catgggtatagggccatcctcaggagcgttgg-aaacttctagtgtctacatccttaaga 151
Query: 661 gaatgattctccttccatgggcaactgccactgccaagaacttcttcagtaacaagtaaa 720
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gaatggttccccttccatgggcaactgccactgccaagaacttcttcagtaacaagtaag 91
Query: 721 gcctgaagagttcttccttccccatcttttcagacattcggactggcttgacgttttgca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gcctgaagagttcttccttccccatcttttcagacattcggactggcttgacgttttgca 31
Query: 781 ggtcctgtccag 792
||||||||||||
Sbjct: 30 ggtcctgtccag 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 1192
Length adjustment: 10
Effective length of query: 782
Effective length of database: 1182
Effective search space: 924324
Effective search space used: 924324
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
