Query= MSMg01no062_h17.b1 MSMg01no062_h17.b1 CHROMAT_FILE:
MSMg01no062_h17.b1 PHD_FILE: MSMg01no062_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:07 2005
(686 letters)
>mm_chr9_105323314_105324399
Length = 1086
Score = 1025 bits (530), Expect = 0.0
Identities = 530/530 (100%)
Strand = Plus / Minus
Query: 157 tgagtatttaaaaagaactctttttaattgcatgttgagtgtacatactggtgcaggtgc 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tgagtatttaaaaagaactctttttaattgcatgttgagtgtacatactggtgcaggtgc 1027
Query: 217 ctttggagagaccagagttggcagttcccctcaagctggattagagatggttgtgagcca 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 ctttggagagaccagagttggcagttcccctcaagctggattagagatggttgtgagcca 967
Query: 277 tttggcctgggtgctgcgactagagctcaggtcttctgcaggagcagtgggttctgggta 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tttggcctgggtgctgcgactagagctcaggtcttctgcaggagcagtgggttctgggta 907
Query: 337 ctgagccattgcgtcagccctatcagggattgtggtttttaaagaggatttgaatattgt 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ctgagccattgcgtcagccctatcagggattgtggtttttaaagaggatttgaatattgt 847
Query: 397 ataatgaaaatagtttaaatagagctcaattttctggtaaattaaaatatttcaatgttt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 ataatgaaaatagtttaaatagagctcaattttctggtaaattaaaatatttcaatgttt 787
Query: 457 cttaatcttacctaacaatagaaatttttttgtaagtgctaattattatttgattggaaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 cttaatcttacctaacaatagaaatttttttgtaagtgctaattattatttgattggaaa 727
Query: 517 ctaagtttcaagatgtataggcatattttatgtgatattttcttatttgcttatttttaa 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctaagtttcaagatgtataggcatattttatgtgatattttcttatttgcttatttttaa 667
Query: 577 atttcaggtctgcaatagaagagggtaaaggcatttataataacattaaaaattttgtta 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atttcaggtctgcaatagaagagggtaaaggcatttataataacattaaaaattttgtta 607
Query: 637 gatttcaactgagcacgtaagtttgcaagaactttttacccatgggtctt 686
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gatttcaactgagcacgtaagtttgcaagaactttttacccatgggtctt 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_h17.g1 MSMg01no062_h17.g1 CHROMAT_FILE:
MSMg01no062_h17.g1 PHD_FILE: MSMg01no062_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:07 2005
(702 letters)
>mm_chr16_73509264_73510367
Length = 1104
Score = 1112 bits (575), Expect = 0.0
Identities = 679/727 (93%), Gaps = 25/727 (3%)
Strand = Plus / Plus
Query: 1 aaccggattcttctacggcagcgctttactgcttcatctgaaggaagaccccgaacaagg 60
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aaccggattcttctaaggcagcgctttattgcttcatctgaaggaagaccccgaacaagg 260
Query: 61 aaaatggtgctgcttatatacccctccgtgtgacgtgtcagctcctgattagctgctcac 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aaaatggtgctgcttatatacccctccgtgtgacatgtcagctcctgattagctgctcac 320
Query: 121 tcatcaccctattactatgccctgggatgggcagtgacttggcacgaatttactcttgca 180
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tcatcaccctactactatgccccgggatgggcagtgacttggcatgaatttactcttgca 380
Query: 181 cctgcgcacattacttgtttgccagttagccacatcggaggctcatgatggcgattgctc 240
||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| ||
Sbjct: 381 cctgcgcacattacttgtttgccagttaggcacagcggaggctcatgatggtgattgttc 440
Query: 241 acagctctccacactcaggtaccaggggaaactccattctttccctcttccaacttagac 300
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 acagctatccacactcaggtaccacgggaaactccattctttccctcttccaacttagac 500
Query: 301 gggactcctatttttatgagcctgtgggccccacatgcttgtactactctctgggttgta 360
| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 gagactccgatttttatgagcctgtgggccccacatgcttgtactactctctggattgta 560
Query: 361 ac-caaa--------------aacaaacaaacaaacaacaa-aa--------aaaaacat 396
|| |||| |||||||||||||||||||| || |||||||
Sbjct: 561 acacaaacaaacaaacaaacaaacaaacaaacaaacaacaacaacaacaacaaaaaacac 620
Query: 397 gttggattttagaaaggctagggagccagacgctgggatgaaatcttgctagctcagaaa 456
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 gttggattttagaaagactagggagccagacgctgggatgaaatcttgcttgctcagaaa 680
Query: 457 ctcagagaaagcacctagctgacacttgttcacagtcaatattccaaaagctagctctcc 516
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 ctcagagaaagcacctagctgacacttgttcacagtcaatgttccaaaagctagctctcc 740
Query: 517 ttctccacgaatcgtagaagctcttcaaactaaatgcccctcccttctacttcctgtgca 576
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 ttctccacgaatcatagaagctcttcaaactaaatgcccctccattctacttcctgtgca 800
Query: 577 tcttgatccattttccatcctccctctttctct-gttttttccctatgttcactcgctgt 635
||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 801 tctcgatccattttccatcctccttctttctcttgttttttccctatgttcactcgctgt 860
Query: 636 caactggttgcttgctctggctcttgacctctggttgactttatttaatcctgtttttaa 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 caactggttgcttgctctggctcttgacctctggttgactttatttaatcctgtttttaa 920
Query: 696 aaaggca 702
|||||||
Sbjct: 921 aaaggca 927
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1104
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1094
Effective search space: 757048
Effective search space used: 757048
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
