BAC Information

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BAC

Clone NameMSMg01-063H12
Chromosome16 (Build37)
Map Location 38,706,770 - 38,706,985
singlet/doubletsinglet
Overlap geneCdgap
Upstream geneFstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a
Downstream geneB4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063H12.T7 (MSMg01no063_h12.b1)MSMg01-063H12.TJ (MSMg01no063_h12.g1)
ACCAG289202AG289203
length784762
length of high quality
(start - end)
217 (124 - 340)268 (132 - 399)
definitionCHROMAT_FILE: MSMg01no063_h12.b1 PHD_FILE: MSMg01no063_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:50 2005CHROMAT_FILE: MSMg01no063_h12.g1 PHD_FILE: MSMg01no063_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNTTTTTTCCCCCCTCCTNNCNCCCCCAC
CTTTAACTCTAAATTGCGCCGCTATACGACTCCTATTCCCAAGGACCGCG
GAATCTCGGATTCCCTCCACTAAAAGAAAGCTTCCAGGGCTAGCCCACCA
ATGCTTTACTGGCTGGTCTCCACCCACAACCAAGGAGATACATACTTGTG
TGCAACACTGCAGTCTGGTTGGTGCTGAAGGACTTGTTTCTATTTGGGTG
TGATGCACTCTTTTCTCTGTCTGTTTCTCTCTGCTCCCGCCTATGAGTGA
CCCAGAGGCTCTCCTCTGTCCATCAAATGGCTCTCTGGCTTCCAGGTATT
CAGGTGAGGAGGGAGTTTGCTTCCTTATGAGTAACGGCATTGGGGCTTGC
TGAAGCTGATATTCATCCGCCCCCCCTGCCAGATGGTTTCGACCTGCTAC
CAGCCGATCTATACCTCTCCCAGTGTTCTATTACCTCCCGCCCCAGTATC
TGAATGATCTGTACACATAATTCCTGCGTTACTCCGAAAACTTCCCGTTC
CATTTCCCTTTCACGCCCACGTTCGTTATCCCCCAAACATTTACCAACCC
TCGCCTGCCCTCGACTAAATGCCAAATCCACATTATCCTATTACACACCA
ATGGACTCACACTATAAACTTTCTTCCTCTCTTCCACCCCACCCTTCCCA
CTAACCCAACTTTTATTAATTCCATTCATACAAATTTTTGCCCTGAAACA
CCCTTATTCCTCTGTCTTTCTCCTTTATTCCCCA
NCCCCNNNNNNNNNNCCCTTTNTTCCCCCNCCCCNCCCCCCCCCNCCCCC
CNNCCATCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCAGCTGGCCCCCTGAT
AACTTCCTTAGTCAGAAATGATGTTTATGTGAAACATCCTGACAGCAGCT
ACAGCCTTCTACAAATCCACAGATGGTAGTCTTGGCAGAAGCACTGTGGA
CAGGAAAAGGAAAATCCATACAGAGTAAGTGTGTATTCTAATAAGAATAA
CATGGCGCCCCGCCATGACGGAAATGCCCTGATACTCCAGTCGTACACCA
AGTAGCTCTGATTAAGTATTCAAGGACTTGTCACAAATTCTGTTTTCACA
GGAGTGAAGGATATATCCCTTTGGACCTCTTCCACGCACAAGTCTATTCT
ATAGATTCACCAGAGTTCTCCAATCTCCCCATGATTTGATGCTTCCCCTC
AGTGCGTACTGTACTTGAGTGCAGTGTTAGTATTTGATACCACGTGCTGG
CGAATTAGGTTTTTACTCTGCATCTCACCTGGCCTGACGTTACATCTTCC
TGACGTCCCGATACCCTCCTCCTTTTCCATCCGCAGCATTATACCCTCCT
CTCTGTATTTCTTTAACGTTCTCCCATACTCTTTTTTATGACCGTGTTTT
TCTGGAGAACATAGCTGCCACCCTTCTTTATATATCTTTATTATCCCTTT
ACTCTCCCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_h12.b1 MSMg01no063_h12.b1 CHROMAT_FILE:
MSMg01no063_h12.b1 PHD_FILE: MSMg01no063_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:50 2005
         (217 letters)



>mm_chr16_38706570_38707187
          Length = 618

 Score =  387 bits (200), Expect = e-112
 Identities = 212/216 (98%), Gaps = 1/216 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaagcttccagggctagcccaccaatgctttactggctggtctcca-cccacaacca 59
           ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 201 aagaaagcttccagggctagcccaccaatgctttactggctggcctcaaacccacaacca 260

                                                                       
Query: 60  aggagatacatacttgtgtgcaacactgcagtctggttggtgctgaaggacttgtttcta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagatacatacttgtgtgcaacactgcagtctggttggtgctgaaggacttgtttcta 320

                                                                       
Query: 120 tttgggtgtgatgcactcttttctctgtctgtttctctctgctcccgcctatgagtgacc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgggtgtgatgcactcttttctctgtctgtttctctctgctcccgcctatgagtgacc 380

                                               
Query: 180 cagaggctctcctctgtccatcaaatggctctctgg 215
           |||||||||||||||||||||||||||| |||||||
Sbjct: 381 cagaggctctcctctgtccatcaaatggttctctgg 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 618
Length adjustment: 9
Effective length of query: 208
Effective length of database: 609
Effective search space:   126672
Effective search space used:   126672
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)