BAC Information

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BAC

Clone NameMSMg01-063I17
Chromosome16 (Build37)
Map Location 63,139,456 - 63,139,662
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
Downstream geneEpha3, LOC100043540
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063I17.T7 (MSMg01no063_i17.b1)MSMg01-063I17.TJ (MSMg01no063_i17.g1)
ACCAG289259AG289260
length1,689688
length of high quality
(start - end)
---574 (73 - 646)
definitionCHROMAT_FILE: MSMg01no063_i17.b1 PHD_FILE: MSMg01no063_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:57 2005CHROMAT_FILE: MSMg01no063_i17.g1 PHD_FILE: MSMg01no063_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNTTTTTTTTNNNNNNNNNNNNNNNNNNNNTTTTNNTTTTTTTT
TTNNTTNNNTTNTTNTNNTTTTTTTNNTTNTTTTTNTGTTNTANTTGTAG
TGGTNTTGNTTGTTTTTTCGTTTAGTTATGTGTGGAGGATAAGGCGAGTG
TACCGGATGCGCGTCTTGTGTGTGGGTNGCTAGGTAACTGTGCTGTTTTT
TTGTAGAGTCGGNGAGGCGCGTAGTATGAGGTGCGGGTGTATTACACGAC
GAGTATATTAGTCTCGCCTGTTACGAATTAATAGAAATGATCGACACGAG
AAGTACAGACACATTTTCACCGCGTCGGTTACTGACGCATAGTGAGAGAG
ACAGACATGATGCTGTGAGCGACGATATATAGGTCAATATCAACCTACAC
ACGATTACACCACAGAACGCTTGACTATGTACACCTCTTCACGTACGTCT
TATATTCTACATATCGATCAGCGACCGGNGTGCGGTTACGCTACAGCGGG
CGCTATCGATAGGACGTGACGTCACACGCGCGAGTCTGAACTNTCGTGTG
NTCGCGTGTTTGGCGTCATGCGCGTGGCGCGCGCATACACGCCGGACGCG
TCGAATTATATTATACCTATCGACATCATACCGCACACCACACATGATAC
TGCAGATATAATATACACACATATCACGTGCACGTCGACACTACTCATCT
CACTCCTTCACATCTGATTCAACGTAGCTGTCTACTATACAGCTGTAGAC
TNTCTGCATTACGCTATTACGACACGTCATGTACGATCAAGGACGCAACA
TAACAGAGACATGTACGCATGATGAGCACGACGACGTGNCGATTCTCGTA
ACTGATATGACTTTATATCTCGCTTACGCGCATCTACGCATGCTGTCNGT
CGCATCTACGAGGCACAACATAGTTATGGCAGCGGTAGACGAGCATCTGA
GNACCCACGATCTATCGTNGACAGACTGACATAGCTGCNGCATAGTAGCG
CGACCGACATCAGTAGTATAGCGTGTTAAGCGCGCGTATGCTACGTCGTA
TACACGTGTACTGCGACTACTATAATCTACTCAGCGCATCGCATCTCTTA
TCATTGGCTATATCAGTACTACTCGACGACGTACGCTATATCTCCTGATN
AGCATTGCTCGTATCGTACGCGCTGCTGCGACAGCGACTGTCTGTCGTAG
AGNGCTGCCATGAGTGATGTACTTGGACGGCATGTGANTGATGCGCGTGG
ATGAGNTGACGTGTCAATCGGATATCACCGATATATCACTCCGTATCGTG
CTGAATACATTTCGTATCTAATCATCTGTAGGAGNTGATATCGCTCTAGC
AGCCNANCGATATGATGACGCATCTGANACGTCNGATGNCGTACTGCGCG
ACGAGTCGCTNATCGCCATATATATGCGCGCCGNTGTCTGATATCGCACT
ATGTCGGCTGATACANGCGTACACNANCTGCAGTCGTGCNATTACGCACG
ACGNCGCGCAGCGTGATACTGTACGCTACACGACTGACGAGCACATATCG
TGCAGTACGCTGTATGCAGGACGCCCGTCANNCTGCGCAGACCGAGTATA
GTCATGCGTGCATGNGACTAGCACGACGAGGTGAGCGATCGCCGTNCGCG
TGGTCGTGAGCCGCGTTCATGATGNTCGTACTGCGCGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCGTGCTATACTTTTTAAATAGATGAAT
GAGAAAATACTGTCGACAAGGATGCAGGGAAAGGGGACTCCCCTCATACT
CAAGGTTTTTATAGATGCAAGATTTTGCTGTAGTGAGTGTTTGCCTCTCT
TCTTTGACTTCTCTGGACCACTAGGCTTTGGACAATAGTTGAAGTGGTTA
AGAATGTTACATAGATTTAACAAAAATTATCCTTCTAGGGAATTAAAAAG
ATTCTAACCTTCTAAAGGGCACATGGAGGAACATACAGAAGAAACAGGAT
TCTTGAGATAAACGAGAAGGCATTAGGGGAAGATGGTCTTTTATGCCGAG
GATATTTGAGGATTTAAATCAGAGATGAAGAACACTCAATTTTAAATTAC
TTCTTGGCTGCAGTAGTAATTTAATACTCTCCATTTTGTTCCATATCTTG
TATAACCATCATATCACACCTTCAGGACATGCACTGGAAAAAAAGTCTAC
ACGAGAAAAACAAACCAAAGGAGACAAGCTTAGAATGTAGTAGACAGAGA
GACTGAAGATGGTGAAGAAATGCTCTGCTCACCTCTCCTTCCGGAGAAAA
ATAGGCCCGGCATTCTTTGAAGTAAAGAACCAAGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_i17.g1 MSMg01no063_i17.g1 CHROMAT_FILE:
MSMg01no063_i17.g1 PHD_FILE: MSMg01no063_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:57 2005
         (574 letters)



>mm_chr16_63138889_63139862
          Length = 974

 Score =  369 bits (191), Expect = e-106
 Identities = 203/207 (98%)
 Strand = Plus / Plus

                                                                       
Query: 368 ttttaaattacttcttggctgcagtagtaatttaatactctccattttgttccatatctt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttttaaattacttcttggctgcagtagtaatttaatactctccattttgttccatatctt 627

                                                                       
Query: 428 gtataaccatcatatcacaccttcaggacatgcactggaaaaaaagtctacacgagaaaa 487
           |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 628 gtataaacatcatatcacaccttcaggacatgcactggaaaagaagtctacacgagaaaa 687

                                                                       
Query: 488 acaaaccaaaggagacaagcttagaatgtagtagacagagagactgaagatggtgaagaa 547
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 688 acaaaccaaaggagacaagcttagaatgtagtagacagagagactgaagatgatgaagaa 747

                                      
Query: 548 atgctctgctcacctctccttccggag 574
           |||||||||||| ||||||||||||||
Sbjct: 748 atgctctgctcatctctccttccggag 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)