Query= MSMg01no063_m13.b1 MSMg01no063_m13.b1 CHROMAT_FILE:
MSMg01no063_m13.b1 PHD_FILE: MSMg01no063_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:17 2005
(315 letters)
>mm_chr16_33580287_33581000
Length = 714
Score = 540 bits (279), Expect = e-158
Identities = 303/311 (97%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 5 gaattctaagccattttaccccccaccccacccccaagcctcctccaattagctacccac 64
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 514 gaattctaagccattttacccctcacccca-ccccaagcctcctccaattagctacccac 456
Query: 65 tctcagctccatgccactggggaaatctgacccagaagtccatcacctgccccacttcta 124
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 455 tctcagctccatgccactggggaattctgacccagaagtccatcccctgccccacttcta 396
Query: 125 tgtggctatgctccccaggcagatggctgaggatgccaagtggccttgtagtgcacagga 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgtggctatgctccctaggcagatggctgaggatgccaagtggccttgtagtgcacagga 336
Query: 185 ccatctcagagatacactcctgctgtgcagcaggcggacaccctgaaacacacagctcct 244
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 335 ccatctcagagatacactcctgctgtgcagcaggctgacacactgaaacacacagctcct 276
Query: 245 gcctcgcaagtctccaagtcaatcccaaccaggaaacaaatcagaaagcctccctagaat 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcctcgcaagtctccaagccaatcccaaccaggaaacaaatcagaaagcctccctagaat 216
Query: 305 cccatggcatg 315
|||||||||||
Sbjct: 215 cccatggcatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 714
Length adjustment: 9
Effective length of query: 306
Effective length of database: 705
Effective search space: 215730
Effective search space used: 215730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_m13.g1 MSMg01no063_m13.g1 CHROMAT_FILE:
MSMg01no063_m13.g1 PHD_FILE: MSMg01no063_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:17 2005
(290 letters)
>mm_chr16_33429223_33429912
Length = 690
Score = 553 bits (286), Expect = e-162
Identities = 289/290 (99%)
Strand = Plus / Plus
Query: 1 agttttctaatggaatgaataatttgaatttgtgctagtaccaaatgtaagctacagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttctaatggaatgaataatttgaatttgtgctagtaccaaatgtaagctacagtat 260
Query: 61 aactgggaccactgtgtacagccccaactccatccttctcatctgattaagataaattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgggaccactgtgtacagccccaactccatccttctcatctgattaagataaattat 320
Query: 121 acttgttccttaaatagtttgagttggcaaaaatgcaatattttagattctcagtgccac 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 acttgttccttaaatagtttgagttggcaaaaatgcaatgttttagattctcagtgccac 380
Query: 181 tattttctggttgtgtcattttagaaaacattttgataaatagttggaatatatttttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattttctggttgtgtcattttagaaaacattttgataaatagttggaatatatttttgt 440
Query: 241 gcttagatactaggtttttgaatggttttcctgttaagtcaaaatgtctg 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttagatactaggtttttgaatggttttcctgttaagtcaaaatgtctg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
