BAC Information

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BAC

Clone NameMSMg01-064A01
Chromosome16 (Build37)
Map Location 77,975,425 - 77,976,169
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp25, 2810055G20Rik
Downstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064A01.T7 (MSMg01no064_a01.b1)MSMg01-064A01.TJ (MSMg01no064_a01.g1)
ACCAG289594AG289595
length1,2121,208
length of high quality
(start - end)
743 (92 - 834)385 (73 - 457)
definitionCHROMAT_FILE: MSMg01no064_a01.b1 PHD_FILE: MSMg01no064_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:35 2005CHROMAT_FILE: MSMg01no064_a01.g1 PHD_FILE: MSMg01no064_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTTCCNNNNNNCTTCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTTATAAATTAGATTTTCCTTAAATAGTTATAAATA
AACAAAAACAAAAATATGATTCTCATAGATTAAAAATTTTCAAAATCTGG
CATCTAAAGGTAGAGATAAAGAAATCAGAGGGAAGAGTATTTTAGAGAAT
TATGTTTGCCTGTCACATGAGGTAAAACTAATGGAAATTACCTAAATTTT
AAACTCCTAAAGAAAGATATAACATATATTAGTTAATGTGAAATACTAAC
AGAACAATTTATAATATTAAAGAAGAACTATCAAGCTGAGACAAAGAAAT
GGGAAAATAAAAACACTTTCAATATTCTTCTAAATGGAGAGAAACCAATA
ACTCAAAGTTAAGTGTTATATTTAATTCTATGATGACATATGTCTTCTAA
CTTCTTAATACAGAACTTCAATTAAGATAAATATCGTATTCACAGAAATC
GGAGTGGAGAAAGAGAGGGAGTTAAGTAGAAAAAGAATAAAGCAAATATA
AAATACAGATTAATTACTTGGTTACAATTGTTGACTAAACATCTTTAGGT
ACTAGTCAAGCCGCCAAAGGAAAAGAGCAATGACAAGTCCTACTCCTGTG
TAAAGCCCATGATTTTCAGCAATGACCAAACAGGCAAGACATCCTCAAAG
AGGCAATAGTGGTACTTACATCTAAGATGTAACCAATGGCCATCCACTTA
ACTGAACTTAACTGCTTCAGAATAGAAAATCCGTGCCTGGTAGTATAAAC
TCAGCCAATTGCTTGTGGCCCTTGATATCACGGACCCAAGAAGAATACTT
CATGCCAGCACTTTCCTAACCCAATTTAATTTCTAACTACATTCTAAACA
CTGATATCTACAGATAGGTGTATCCCTTGATCCTCATCAGTAAAGCTTTC
TTTTCTAAAACTGAGATGATGATTGAAATCCCCCAGGTGACCCAAATGGC
GAAAACCTGATTTATAAGGGGCCCATTTCCCCCTGGATTTATTTTTAAAA
AATGGATTTACTTGGTGAGACTTTTTGAAAAAAAGTTGTGAAAAAAACAG
GAAAGCCGGGGCCCCTTTAGAATCTTTATTTATTATGGTGAAACCTAAAT
TAGAATTTGTAAAAAAGGCCACACCAAGAGAGTTGTTCTTCCCTCCTAGG
GGGTGGGGGAAA
NNNTTGATGAAGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAAAATATTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGACTGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGATTCTATACCCCCCCCAACAGAGGAATGGATACAGAAAAAGAG
GAACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGG
ATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAA
ACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCC
TCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACGGAG
TTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGTCTGCCATATCCAGG
GATCCACCCCATAATCAGCATCCAAACGCTGAACCCATTGCATACCCTAG
CAAGATTTTATTGAAAGAACGCAAATGTAGTTGCCCCTTGTGAAAATAAG
CCCGGGGCCCAGCAAAAACAGAAGTGGATGGTCCCAGGCCCGCTAAGGGA
TGGATTCATAAGGGCTCCCCAGGGGGGGGAGCTACAAAAAAGTACCCCAG
GAAGTTAAAGAGGATCTGTCACCCCCTTATGGGGGGAACACCCTTTTTTG
AGTTATACCCCTNCCCCCGGAGGTTTTTTGGATTTCTACGGGCGTTATAA
TTTAAAAAAAAAGGGCCTTAATTCCCCCTTCTTTGTGTAAGAAAAAGAGC
CCTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_a01.b1 MSMg01no064_a01.b1 CHROMAT_FILE:
MSMg01no064_a01.b1 PHD_FILE: MSMg01no064_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:35 2005
         (743 letters)



>mm_chr16_77975225_77976369
          Length = 1145

 Score = 1367 bits (707), Expect = 0.0
 Identities = 735/745 (98%), Gaps = 2/745 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttataaataaacaaaaacaaaa--atatgattctcatagattaaaaattttcaaaatctg 58
           ||||||||||||||||||||||  |||||||||| | ||||||||| |||||||||||||
Sbjct: 201 ttataaataaacaaaaacaaaattatatgattcttagagattaaaatttttcaaaatctg 260

                                                                       
Query: 59  gcatctaaaggtagagataaagaaatcagagggaagagtattttagagaattatgtttgc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatctaaaggtagagataaagaaatcagagggaagagtattttagagaattatgtttgc 320

                                                                       
Query: 119 ctgtcacatgaggtaaaactaatggaaattacctaaattttaaactcctaaagaaagata 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcacatgaggtaaaactaatggaaattacctaaattttaaactcctaaagaaagata 380

                                                                       
Query: 179 taacatatattagttaatgtgaaatactaacagaacaatttataatattaaagaagaact 238
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 taacatatattagttaatgtgaaatactaacagatcaatttataatattaaagaagaact 440

                                                                       
Query: 239 atcaagctgagacaaagaaatgggaaaataaaaacactttcaatattcttctaaatggag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaagctgagacaaagaaatgggaaaataaaaacactttcaatattcttctaaatggag 500

                                                                       
Query: 299 agaaaccaataactcaaagttaagtgttatatttaattctatgatgacatatgtcttcta 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaaccaataactcaaagttaagtgttatatttaattctatgatgacatatgtcttcta 560

                                                                       
Query: 359 acttcttaatacagaacttcaattaagataaatatcgtattcacagaaatcggagtggag 418
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 acttcttaatacagaacttcaattaagataaatatcgtattcacagaaattggagtggag 620

                                                                       
Query: 419 aaagagagggagttaagtagaaaaagaataaagcaaatataaaatacagattaattactt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagagagggagttaagtagaaaaagaataaagcaaatataaaatacagattaattactt 680

                                                                       
Query: 479 ggttacaattgttgactaaacatctttaggtactagtcaagccgccaaaggaaaagagca 538
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 ggttacaattgttgactaaacatctttaggtactagtcaagccaccaaaggaaaagagca 740

                                                                       
Query: 539 atgacaagtcctactcctgtgtaaagcccatgattttcagcaatgaccaaacaggcaaga 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 atgacaagtcctactcctgtgtaaagcccatgattttcagcaatgaccaaacaggcaaca 800

                                                                       
Query: 599 catcctcaaagaggcaatagtggtacttacatctaagatgtaaccaatggccatccactt 658
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catcctaaaagaggcaatagtggtacttacatctaagatgtaaccaatggccatccactt 860

                                                                       
Query: 659 aactgaacttaactgcttcagaatagaaaatccgtgcctggtagtataaactcagccaat 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aactgaacttaactgcttcagaatagaaaatccgtgcctggtagtataaactcagccaat 920

                                    
Query: 719 tgcttgtggcccttgatatcacgga 743
           |||||||||||||||||||||||||
Sbjct: 921 tgcttgtggcccttgatatcacgga 945


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1145
Length adjustment: 10
Effective length of query: 733
Effective length of database: 1135
Effective search space:   831955
Effective search space used:   831955
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)