BAC Information

Click to search

BAC

Clone NameMSMg01-064K13
Chromosome16 (Build37)
Map Location 48,481,298 - 48,481,879
singlet/doubletsinglet
Overlap geneMorc1
Upstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023
Downstream geneTrat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064K13.T7 (MSMg01no064_k13.b1)MSMg01-064K13.TJ (MSMg01no064_k13.g1)
ACCAG290072AG290073
length1,3111,308
length of high quality
(start - end)
626 (129 - 754)257 (129 - 385)
definitionCHROMAT_FILE: MSMg01no064_k13.b1 PHD_FILE: MSMg01no064_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:45 2005CHROMAT_FILE: MSMg01no064_k13.g1 PHD_FILE: MSMg01no064_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTATTTTNNNNNTTCATTTGGGCGCTATAGACTACTATAGGGAGAGGA
TCCGCGGAATTCAACTCTTTTCAACCTTGCTTATAAGGACTACTTAGGAG
ATATATTCCACTAGGTCAGCCCTTTATATGAATTGAAAAACATTCACATT
TGGCTTTTTTATCTAAGTTACTACTGAAAATACTGAAGAGGGTATGATTT
AGGAATGAAGCTAGTGACACCAACACATGCACATACACACATTGACATAT
TGCCTACTTCTGCCAGTACAGAGCTAACAATGTCTCTTCAGAAGGTGAAG
GCAAACATACTAAGATGAAAACAGCAAGTGTTCGCCAAAAGGAGTTTTAT
GTTGTAAAACTCAGCTTATTAAAATCTCTTCGGAAAATGGAAAGGAATAC
ATTTTCCAGTGGCTTGAACATTTTTTTTAACCAAACTCACTAAGACAGGA
ATAACTTGAAAAGACCAGCTGACTGATCCAGAAGACCCTTGGTACCTCCC
ACAAGACTGAGACTGATGGAGATGAAACACTGTTTGATATTTACTAGGAA
ATGAACAGCCTGACGTGATCTCAGCCTATGAACACTTTACTTCCAAAGAT
GATCTTCAGAATGAACAGAAATCCAAATCGGAGCTGTTGAGAAATCCACT
GTTGTTTGGTGAAGTCACAGAATTAATCTGTATTTTTAATTTACATCTCT
TTGAGGAATTTTCAAGCACCAGGCCAGCAGTTGAGATTTCATGACACCAT
GACAAACTGAAAGCAAAGATGTTTTACCAAAAGTAACCTGATATATAGAA
AGAAACACCAAATGAGGACTGGTAAAAAGAAAAGAAAATGGAACCAGAAG
ATTTGAGTTTTTATTCAGATCTCTAACATCATGATGGTTTAAAGCAAAAC
AAAACCCCAAAGGCCACTGTAGAAAAATAATATAAGTTAAAGGGAACTAA
TTTTAGCCTTCATTAAAAAATTGTTTTTTCCTAGTGGAATTGGAAGTTTC
CTTAAGTGGAAAACCCGTTTTTTTATTTTTTAGATCTCTGGTAACTTGGA
AAAATCTGGACAAAAGTGGAAAGTGGGGTAACCTCTTAACAAAATTAAGG
GGTTTACCCCCGAAAAAAAAAAAATCCCTTCGGACAAAAAAATAATTGTT
TTTATTTATAAAAAGACACCTTGTGAAATCTTTCTAATAAAATTTTGGGG
GCAAACAAGGAATTTTTATTTTATATTAGAAAATCTCAGGCGTAAAATAT
TTTTATTTATAAATAGTGGTGTATAAAAATAAAGAGATGTTGTGTGGTAA
TAGTCTCTCTA
NNAAGAGATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTGTAAAGGCAAAGTAAGGATCAAGAAACA
GCTGGGCAGTGGTAACGCATGCCTTTACCCCCAGCACTTAGGATTAGGTG
GATTTCTGAATTCAAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGACAG
CCAGGGCTACACAGAGAAACCATGTCTCAAAAAAACAAAACAACAAAAAC
AAACAAACAAAAAACCAAAAAAAGAAAAAAAAAAGAAAGAAACCCCCACC
GTGCCCTCCTTGAGAAGGGAAGGGAGTTCCTTCTGCTAGCCCATCTCAAT
TTCCTAAATTATTTTAATGTTGGGTTTCTTAGGTAGCTCAGTCTGGCCTT
GAGTTTCCTATGCAGTTGAGGCTGGCGTTCAACTCCTGATCCTCCTAGTG
GTTTTTTTTTTCCCCCCCCCCTTCCTCTTGCTCCCTTATGAAAAAAAAAA
GAGGAAAAATTAGAAAAGGTGTTTCTGAATATTTACTATGAAGTTAAATT
ATATATTTATGTGTGCATATAAGTGTACATGAGGGTGCCTGAAAAGGCCT
GAAGAGGGTGTCATAGTCCCTGGATATGGAGTTACAGGTGACTGGGAATG
TCCTGAGAGGTTGCTAGGAACCAAGTTCTGAATAATGGAGCTATTTCTGA
ACATATTTCTTCTCAGGACAAGTCCAACCCATTTATGTATGTTTTCCGGA
AAAATTGTTTGTCTAGGGTTTTCTTAAAACCTTTCTCATATTGTGATTCT
AGGATAATTAAGGATACGAAGATGGAGAAATTCTCTTGGATGAACTTCGG
AATTGGTGAAAAAACCTTCTTGGGCCCTTGGAAAATCCAATAAGTGTGTT
CCCCTTCTCTCGTTTTTTTTTTCTATTGCCCCGTGTTTATCCCTATTAAC
AATTCTGGAAATCGTGTTTTCAAGTGTATTTTGTCTCTTAAAATTTTGGT
CTCTTTTTTTCCTTGCTGCTTTTAAATTCAACACCTTATGCCCTTCTCTA
TTCTTTCTATCCTCTTTTATTTGTGAGTAACCTCTTGTTATTATCCATGT
ATTCTTCTCCCGGCAAGGATAAATTTTTCTTTATTGTGTCCTCTTCCCCT
TTATTGTGTGGTTGTTTTACCAAATTTACTCCTTTCCTGATCCTACTATT
GTTATAAATCTCTTCTCTTAATATTTTCTCGTGCTCTCAGTAGCAATTTC
GCTTGTCTNTCTTATCTACTTGTTCTCTGCTTTACTTACTTCTCTGTATT
GTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_k13.b1 MSMg01no064_k13.b1 CHROMAT_FILE:
MSMg01no064_k13.b1 PHD_FILE: MSMg01no064_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:45 2005
         (626 letters)



>mm_chr16_48481244_48482269
          Length = 1026

 Score =  891 bits (461), Expect = 0.0
 Identities = 565/627 (90%), Gaps = 50/627 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaattgaaaaacattcacatttggc-ttttttatctaagttactactgaaaatactgaa 59
           |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 636 tgaattgaaaaa-attcacatttggcattttttatccaagttactactgaaaatactgaa 578

                                                                       
Query: 60  gagggtatgatttaggaatgaagctagtgacacc-a-acacatgcacatacacacattga 117
           ||||||||||| |||||| ||||||||||| ||| | |||||  ||||||||||||||||
Sbjct: 577 gagggtatgatgtaggaaggaagctagtgataccgacacaca--cacatacacacattga 520

                                                                       
Query: 118 catattgcctacttctgccagtacagagctaacaatgtctcttcagaaggtgaaggcaaa 177
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 519 catattgcctacttctgccagtacagagctaacaatgtcttttcagaaggtgaaggcaaa 460

                                                                       
Query: 178 catactaagatgaaaacagcaagtgttcgccaaaaggagttttatgttgtaaaactcagc 237
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 catattaagatgaaaacagcaagtgttcgccaaaaggagttttatgttgtaaaactcagc 400

                                                                       
Query: 238 ttattaaaatctcttcggaaaatggaaaggaatacattttccagtggcttgaacattttt 297
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttattaaaatctcttcagaaaatggaaaggaatacattttccagtggcttgaacattttt 340

                                                                       
Query: 298 tttaaccaaactcactaagacaggaataacttgaaaagaccagctgactgatccagaaga 357
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 339 cttaaccaaactcactaagacaggaataacttgaaaagaccagctgacagatccagaaga 280

                                                                       
Query: 358 cccttggtacctcccacaagactgagactgatggagatgaaacactgtttgatatttact 417
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 279 cccttggtacctcccacaagactgagattgatggagatgaaacactgtttgatatttact 220

                                                                       
Query: 418 aggaaatgaacagcctgacgtgatctcagcctatgaacactttacttccaaagatgatct 477
           |||||||||||||||||||             |||||                       
Sbjct: 219 aggaaatgaacagcctgac-------------atgaa----------------------- 196

                                                                       
Query: 478 tcagaatgaacagaaatccaaatcggagctgttgagaaatccactgttgtttggtgaagt 537
                 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 195 ------tgaacagaaatccaaattggagctgttgagaaatccactgttgtttggtgaagt 142

                                                                       
Query: 538 cacagaattaatctgtatttttaattt-acatctctttgaggaatttt-caagcaccagg 595
           ||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct: 141 cacagaattaatctgtatttttaattttacatctctttgaggagtttttcaagcaccagg 82

                                      
Query: 596 ccagcagttgagatttcatgacaccat 622
           |||||||||||||||||||||||||||
Sbjct: 81  ccagcagttgagatttcatgacaccat 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)