BAC Information

Click to search

BAC

Clone NameMSMg01-064P13
Chromosome16 (Build37)
Map Location 56,750,068 - 56,750,474
singlet/doubletsinglet
Overlap geneGpr128
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp, Tfg
Downstream geneTmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P13.T7 (MSMg01no064_p13.b1)MSMg01-064P13.TJ (MSMg01no064_p13.g1)
ACCAG290292AG290293
length1,218732
length of high quality
(start - end)
420 (27 - 446)38 (75 - 112)
definitionCHROMAT_FILE: MSMg01no064_p13.b1 PHD_FILE: MSMg01no064_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:20 2005CHROMAT_FILE: MSMg01no064_p13.g1 PHD_FILE: MSMg01no064_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGGCACTGGCGTATAGATCCTAAGGGAGAGGATCCGCGGAATTCAGA
GCTGTTTCTTTTCTAATATCAGCAAGAGCAGCAATTAGGACAGCTGCAAT
GGAAAGAGGTTCAGGAAATCCAAGCCCCCCACATATGGCCAGGTATGTAC
TAAAGCGTTCCACTCCATAAGGATCTCACTCTTAACACAGTTTGTCTAGT
GGAATGTGCCAACTTCTTCCCACATATGCATCTTTTCAATGCTTACAAAC
ACAGTGCTAAACTAAACTTGTCTGTCTGTCCTGAAACCCCATGGTAAACA
ACAACCAAGACCTCTGTTACTTTCGAGCATGCTCCTTTTTAGCCCTATCG
CTTTATCCCCTTTCCTATTTTATCTGAATTTACAATCTATGTAAATAATA
CCTCAACGGTGTCCTTGGCTGATGTATCCTAGACCTGTGTATAAGGTTTT
TTCTCCCCCCCCAAGAGATTGATTGTTTTGCGCATGAAAAGAATCAATAC
AGCGAAATTGGTCGTGTGGCTGCAGTTGCAACGGAGGAATTCTGTGGTGT
TCCCGGTTTTTTGGCAGCCTTGTGTGTCCCAGTCATTTATTAAAAAATTC
CAGTAGACACAAGCATAGGAGTGAAGCCGGAGTTCTCTTTTGTCATACTG
TGAGTTGATGGCACATTTAATGATTAATTGGATAGGGAAACCTCTGATAG
GATTAGATAGTCCCAAGAGAAATGAGTACATACCATGCATTCTTATAGAC
TGAGGGAAGAAGAAAGGCATAAAAAGTTGTAAAGCTAGAATCCCAGTACT
TGCGAATCTGAGGTTGTAGGACTGCTCCAAGTTTATTACCAGCTTAGAAT
TGTATAGTGAGTTTTGCCTCTAGCACACAATATAATATCTATCAATCCTA
AAAAGTTTCGGGAGGATACATAATCTAAATATATTTCTCATTTTAACGTT
GTCCAAAAATTTTATTTATAATACCTTTTTTTATGTATTATTCTCCAAAA
AATTTTTTCTGGTTATCTTTTTTTTTTTTAAATTATCTATTTTTTTATTT
TTTAGTTAATTTTTAACTCCTCATTAATTGCTCTTTCTAACTACCCTACA
TAAATATTTTTGTATTTTCCCTTCTTTATGTGACCTTTTCTCTCACTTTC
TTTTTATTATTCTTATTATTTATTCTTTATATTAATAATTAATATATTTT
ACTTATTTATTATCTTAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGTTACCTATTCAACATT
CAAATTCACTTCTAGAAAAGACAGGGAAACTAATTAGGCATTACAGTTTA
TTTGTATAGCGCTAGAAAAGCTTGGGGCTAGCCTACATAGTAATTACTTA
GGATAATAGCTGAGTCACACCCAAACACAGGAATACACAAGGGCCTAGGA
AATAGGGGGATTGTAGTATGAAAGCGTTAATAGAAGGGAATTCCCCTGGA
GCAGGTTTTTTCACTAGGCCCAGAGGAATAGTATAATCAAGTATTTACCC
GGGGGGCTGTTTTAACACCACCCCACCATTGTATCAAAGCATTCACCTGG
CTCCTGGGTTTACCCCCACTTTAATTAAGGGTTGTTCCTATTCTCAGCGG
TAAACATGGCCGGGCTCCCGCCATCTTTTTATGTATGCATCTTCTTTTTT
TGGGCCAAGGTAACTTGAAGGATGGGTTCACCTGGCTTTCTTGGTTTTTT
TCTTCTGAATCAAAAGCCTGGGGTTTGCTTGGAAAAAATTACCTTCGGAT
TCAGCACTCCCTTGTGCCTGTGTGGTTTTGTCCCCCTTTTCTCGCCAACT
CTTTGCTCATCTGTCGGAAACTCTGATTTCCCCCGGATTGATACAGCCCG
TATGACCCCAGCGCGTGCCCCCCCCCTGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p13.b1 MSMg01no064_p13.b1 CHROMAT_FILE:
MSMg01no064_p13.b1 PHD_FILE: MSMg01no064_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:20 2005
         (420 letters)



>mm_chr16_56749853_56750674
          Length = 822

 Score =  741 bits (383), Expect = 0.0
 Identities = 401/407 (98%), Gaps = 2/407 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattca-gagctgtttcttttcta-atatcagcaagagcagcaattaggacagctgcaa 73
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcaagagctgtttcttttctacatatcagcaagagcagcaattaggacagctgcaa 275

                                                                       
Query: 74  tggaaagaggttcaggaaatccaagccccccacatatggccaggtatgtactaaagcgtt 133
           |||||||||||||||||||||||||   || |||||||||||||||||||||||||||||
Sbjct: 276 tggaaagaggttcaggaaatccaagtggcctacatatggccaggtatgtactaaagcgtt 335

                                                                       
Query: 134 ccactccataaggatctcactcttaacacagtttgtctagtggaatgtgccaacttcttc 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccactccataaggatctcactcttaacacagtttgtctagtggaatgtgccaacttcttc 395

                                                                       
Query: 194 ccacatatgcatcttttcaatgcttacaaacacagtgctaaactaaacttgtctgtctgt 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccacatatgcatcttttcaatgcttacaaacacagtgctaaactaaacttgtctgtctgt 455

                                                                       
Query: 254 cctgaaaccccatggtaaacaacaaccaagacctctgttactttcgagcatgctcctttt 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cctgaaaccccatggtaaacaacaaccaagacctctgttactttcgagcatgctcctttt 515

                                                                       
Query: 314 tagccctatcgctttatcccctttcctattttatctgaatttacaatctatgtaaataat 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tagccctatcgctttatcccctttcctattttatctgaatttacaatctatgtaaataat 575

                                                          
Query: 374 acctcaacggtgtccttggctgatgtatcctagacctgtgtataagg 420
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acctcaacggtgtccttggctgatgtatcctagacctgtgtataagg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 822
Length adjustment: 9
Effective length of query: 411
Effective length of database: 813
Effective search space:   334143
Effective search space used:   334143
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)