BAC Information

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BAC

Clone NameMSMg01-065J07
Chromosome16 (Build37)
Map Location 78,702,117 - 78,702,219
singlet/doubletsinglet
Overlap gene4930570E03Rik
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605
Downstream geneChodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065J07.T7 (MSMg01no065_j07.b1)MSMg01-065J07.TJ (MSMg01no065_j07.g1)
ACCAG290756AG290757
length797790
length of high quality
(start - end)
44 (135 - 178)104 (140 - 243)
definitionCHROMAT_FILE: MSMg01no065_j07.b1 PHD_FILE: MSMg01no065_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:08 2005CHROMAT_FILE: MSMg01no065_j07.g1 PHD_FILE: MSMg01no065_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTTTTTTTTNNNNTTTTTTTTTTCTTTTTTTTTTTNNTTTNTNTTT
TNTCCCTTTCTTCTTCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXT
TCAAGAAATCCGCGGAATTCATTATGTCTCCACGAAACTCCTCTGCTTCC
ATTCTCAACACTGAAACCCCACTCACTCTAGGGAGTGTGGAAACCCCTGA
TTGTTCAGGAAAGATACTGGAGCATTTGTTCTGAGAGCTGCTCCTGTCCC
ATGGTTAGATGTTCTGCTACTCATCTTAAAGGGGTTTCCTTCCTCCTCCT
CCTCCTCCTCCGTGTTCATCTGTAAACATCTTAAACCCTGCTTCACCCAC
TGCACCCCTGGGTTATTACCCACTCCAATCTAGTTCTTTTGTTCCTCTAA
AAAACTTTCTCTAACCATCACACCTCATTTATCTTCTTACACATGGTCTT
ACTACTGCCTCTTTGTTGATTTTTTTTTTCTTGCCCACCTATGTACATAG
TTAATAATTTGCCACTTCCCTAGCTTTACCGATAGGATATCCTCATTCTT
AATTTTCGGCCTCTCCATAATTATATTACTCAAATTGCATAAACAGTAAC
TGTTAACAGCTATCGTCTTACTTATGATCCCATTAAATGCTTACCTCATA
CATAATGTTCTCATTTTTTACACTATCCAGTACTTTTATGTTACTATTTT
CCGCCCTCCGTCCCAATAATCCTGCTCTATACTTATCCCAGCTCAACTGA
CATAATTCTTATACCACACTTTACCTTCTATTTCTACCAACCTTATG
NTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTNNTTATANAATATA
TTTTCATATTATTATCTATATAGGAGTAGGCCTGGCGGCCGCCTGTTTCC
CAAAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCATTTGAGATAT
AGAAAACTTGCCCATTTGCGGTTCTGTTTCATTTCTGCCCATTTTATTAC
TGTCTCACACATATTGCATTCTATAAATTTCATAAACTCAATAATATGTG
ATACAGACATACCTCAGAAATGTTATTGCAGACCACTGCAATAACACAAA
TATTGAAATAAAGCACAGCCGCACAATTCCTCATTGCTTTCCAAGTGCCT
ATAAAAGTTATAGCTCTGCTGTGCTATATTCTATTATTGTTCAACTGCGA
GACGTATATAAAAAACATACTCCTCAATTGAATGTCACCCCATTATATCT
TTTTAACTCATACTACTCTATGAGTGCTTCTTACAATCCCTAATATGATT
ATTTCTTTTTACGCACATGCATTGATTTTGCTTCATAGAATAATGCCCAG
CTATACTGAAATATACTACTAATGTTTATTTATAAAATACTATTATTCCA
AATTATTGAATACCATATTCCATACTTCGCCTGAAGAATAATACAAAAGG
TACGTAGTAACACTATCCTACCCCATTATAATATCTCTCCTAATTTCTTA
TGACTACTATTCCAACTTTTTCTCTGTACCATAATCAACACAACTTTAAA
CCCTCTCCCATAGATACTGCCCTCCACAGGATATTAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_j07.g1 MSMg01no065_j07.g1 CHROMAT_FILE:
MSMg01no065_j07.g1 PHD_FILE: MSMg01no065_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:08 2005
         (104 letters)



>mm_chr16_78701917_78702419
          Length = 503

 Score =  163 bits (84), Expect = 4e-45
 Identities = 99/104 (95%), Gaps = 1/104 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgagatatagaaaacttgcccatttgcggttctgtttcatttctgcccattttatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 303 atttgagatatagaaaacttgcccatttgcggttctgtttcatttctgcccgttttatta 244

                                                       
Query: 61  ctgtctcacacatattgcattctataaatttcataaactcaata 104
           ||||| || |||| |||| |||||||||||||||||||||||||
Sbjct: 243 ctgtcacatacatgttgc-ttctataaatttcataaactcaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 503
Length adjustment: 8
Effective length of query: 96
Effective length of database: 495
Effective search space:    47520
Effective search space used:    47520
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)