Query= MSMg01no065_j24.b1 MSMg01no065_j24.b1 CHROMAT_FILE:
MSMg01no065_j24.b1 PHD_FILE: MSMg01no065_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:11 2005
(239 letters)
>mm_chr16_87048811_87049449
Length = 639
Score = 455 bits (235), Expect = e-132
Identities = 238/239 (99%)
Strand = Plus / Minus
Query: 1 tcagctatctgacttcaagtaagttacttcagtcctctggtcctcaattttctcatttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcagctatctgacttcaagtaagttacttcagtcctctggtcctcaattttctcatttgc 445
Query: 61 gaaattaagaagatcaacgtttcctctaacatggactcatgattgagtttggggaaagag 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 gaaattaagaagatcaacgtttcctctaacgtggactcatgattgagtttggggaaagag 385
Query: 121 taaagttaaaacagcggtctgggtttgccctgcctcctctctgtcgctttccaccgaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaagttaaaacagcggtctgggtttgccctgcctcctctctgtcgctttccaccgaatt 325
Query: 181 agtcacatggattggttgaggacctccaatctggcaaagtgttgtctgtggtagggaac 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtcacatggattggttgaggacctccaatctggcaaagtgttgtctgtggtagggaac 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_j24.g1 MSMg01no065_j24.g1 CHROMAT_FILE:
MSMg01no065_j24.g1 PHD_FILE: MSMg01no065_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:11 2005
(493 letters)
>mm_chr16_86896462_86897355
Length = 894
Score = 940 bits (486), Expect = 0.0
Identities = 492/494 (99%), Gaps = 1/494 (0%)
Strand = Plus / Plus
Query: 1 aaagtggcatggaagaaagagaaaacaatgaaaaagtttttttgtgtaaacacgaacatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagtggcatggaagaaagagaaaacaatgaaaaagtttttttgtgtaaacacgaacatc 260
Query: 61 tctaactattgacttcattatttgataaacaccaatggaaactaccagtcataccatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaactattgacttcattatttgataaacaccaatggaaactaccagtcataccatcag 320
Query: 121 tacagcttggattttcactcttgaccctcatgtagttcttgacttttccttccttcactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagcttggattttcactcttgaccctcatgtagttcttgacttttccttccttcactg 380
Query: 181 tggcagaataaaattttagatcataagaagaaacaggcaaaagaaaaaaaaagctctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcagaataaaattttagatcataagaagaaacaggcaaaagaaaaaaaaagctctcct 440
Query: 241 cctccttgtataaggatgctctactcatgagtagccaccatgatgaagaaagttgactta 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctccttgaataaggatgctctactcatgagtagccaccatgatgaagaaagttgactta 500
Query: 301 atttctctttgttctgagttaatttgacttaattcactccttagtctttagtcatgctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttctctttgttctgagttaatttgacttaattcactccttagtctttagtcatgctgt 560
Query: 361 aaatgcttttgttctttacagtaaggtagggtctgttagaaataattgattctgacattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgcttttgttctttacagtaaggtagggtctgttagaaataattgattctgacattg 620
Query: 421 tagtaagaagtaacc-tcagcaatacacacaaatcaccagtcagtggtggcgcacacctt 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtaagaagtaaccatcagcaatacacacaaatcaccagtcagtggtggcgcacacctt 680
Query: 480 taatcccaacactt 493
||||||||||||||
Sbjct: 681 taatcccaacactt 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space: 426972
Effective search space used: 426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
