BAC Information

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BAC

Clone NameMSMg01-065N14
Chromosome16 (Build37)
Map Location 34,505,778 - 34,506,310
singlet/doubletsinglet
Overlap geneKalrn
Upstream geneSlc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a, Pdia5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065N14.T7 (MSMg01no065_n14.b1)MSMg01-065N14.TJ (MSMg01no065_n14.g1)
ACCAG290961AG290962
length687691
length of high quality
(start - end)
533 (74 - 606)312 (319 - 630)
definitionCHROMAT_FILE: MSMg01no065_n14.b1 PHD_FILE: MSMg01no065_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:28 2005CHROMAT_FILE: MSMg01no065_n14.g1 PHD_FILE: MSMg01no065_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXTAAATACGAAAAATCCGCGGAA
TTCCCTGTGTCTCCCCTCCCAAAAAACTCTGGATATGCCCTTTTATACAG
TTCCTCATACTGAGGTGCCCCCCGCCCTCCCACCATAAATTTTGTTGCTA
CTTTATAACTGTAGTTTTGCTACTATTAATTATCCTCATGTGAATATGTA
TCTTCCAAGGGTCTTAGGTGACCCCTCTGAAAGGGTCATTTAACACCTAA
AGGAGTCACATCTTTGAACTTCCCTCTCCTTCAGCTATGCATCTCCTTCA
GGCCTCACTGTGTCTTGGTCCACTTCACAGACTGGAGAGTCTGACTTCAC
CAAAGTTCTGTTTGCTATTCAGGGTAGATACACACAGCCAAGTAAATAGT
TTTTATTTCTTCCTATGGTGTCCTAGTTCATTTTACTTACCAATTCTGTT
GTAAAGGACCTTCTGTGCATCCAAATGTTTCCTTAGACCATAAGCACCCC
AGGCCATGCCTCTTGGGATTCCCAGCTCCTAAGTCTACTCCCAGATACAG
GAGTATTATCCAATACATTTTAATGACATGCTACTACCCTGCCACCAATC
GTTTGTAACCTGATGTAAGTGGAGAGCACCTTCAGCTCTCTCCCCAGCTC
CAGCTCTTACCACATAAAAGCTCCACAGCCTCTGACC
ATGCAGTGGTAGGCCTGGCGACCGCCTGGTTTCAGATTAGGGGTGAACTA
TAGAAGTATCAGCAAAATTCTCACCTGAGGAATACCGAATGGCTGAGAAG
CACCTGAAAAAATGATCAGCATCCTTAATCATCAGAGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCCAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTC
CCCATTGTTGGTGGAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTC
TGGTGGTTCCTCATATTTATTGGACATAGTACTACCGGAGGATCCCGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGT
ACATTTACACAATGGAGTGCTACTCAGCTATTAAAAAGAATGAATTTAGG
AAACATTTATTTTAGTTCATGGTTTCAAAGGGTGAACTGTGGTTAGCTTG
AATCTGTGCTTCTTGGCCTCATTGTGGCAAGGGTGAACATGACATCAGTG
TGTGTGTGTGTATGTGGGAGCAAGGGGAGACTATTGACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_n14.b1 MSMg01no065_n14.b1 CHROMAT_FILE:
MSMg01no065_n14.b1 PHD_FILE: MSMg01no065_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:28 2005
         (533 letters)



>mm_chr16_34505578_34506510
          Length = 933

 Score = 1023 bits (529), Expect = 0.0
 Identities = 532/533 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactctggatatgcccttttatacagttcctcatactgaggtgccccccgccctcccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactctggatatgcccttttatacagttcctcatactgaggtgccccccgccctcccac 260

                                                                       
Query: 61  cataaattttgttgctactttataactgtagttttgctactattaattatcctcatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaattttgttgctactttataactgtagttttgctactattaattatcctcatgtga 320

                                                                       
Query: 121 atatgtatcttccaagggtcttaggtgacccctctgaaagggtcatttaacacctaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgtatcttccaagggtcttaggtgacccctctgaaagggtcatttaacacctaaagg 380

                                                                       
Query: 181 agtcacatctttgaacttccctctccttcagctatgcatctccttcaggcctcactgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 agtcacatctttgaacttccctctccttcagctatgcatctccttcaggcctcactgtgc 440

                                                                       
Query: 241 cttggtccacttcacagactggagagtctgacttcaccaaagttctgtttgctattcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttggtccacttcacagactggagagtctgacttcaccaaagttctgtttgctattcagg 500

                                                                       
Query: 301 gtagatacacacagccaagtaaatagtttttatttcttcctatggtgtcctagttcattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagatacacacagccaagtaaatagtttttatttcttcctatggtgtcctagttcattt 560

                                                                       
Query: 361 tacttaccaattctgttgtaaaggaccttctgtgcatccaaatgtttccttagaccataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacttaccaattctgttgtaaaggaccttctgtgcatccaaatgtttccttagaccataa 620

                                                                       
Query: 421 gcaccccaggccatgcctcttgggattcccagctcctaagtctactcccagatacaggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaccccaggccatgcctcttgggattcccagctcctaagtctactcccagatacaggag 680

                                                                
Query: 481 tattatccaatacattttaatgacatgctactaccctgccaccaatcgtttgt 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattatccaatacattttaatgacatgctactaccctgccaccaatcgtttgt 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)