Query= MSMg01no065_n17.b1 MSMg01no065_n17.b1 CHROMAT_FILE:
MSMg01no065_n17.b1 PHD_FILE: MSMg01no065_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:28 2005
(607 letters)
>mm_chr16_38371576_38372580
Length = 1005
Score = 733 bits (379), Expect = 0.0
Identities = 383/385 (99%), Gaps = 2/385 (0%)
Strand = Plus / Minus
Query: 223 cccccaattaaaaataaatcttagacacacacacacttaaaaataaatctttttttcaag 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 cccccaattaaaaataaatcttagacacacacacacttaaaaataaatctttttttcaag 946
Query: 283 acagggtttctctgtgtagccctggctgtcctgaaactcactctgaaggccaggctggcc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 acagggtttctctgtgtagccctggctgtcctgaaactcactctgaaggccaggctggcc 886
Query: 343 tcaaactcatagaaatccacctgcctctgctctgcctcctgagtgctgagattaaaggtg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tcaaactcatagaaatccacctgcctctgctctgcctcctgagtgctgagattaaaggtg 826
Query: 403 tgtgccaccaccacctggtttaaaaataaatcttgtaaaaatagacacacctgacttccc 462
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 825 tgtgccaccaccacctggtttaaaaataaatcttgtaaaaatag--acacctgacttccc 768
Query: 463 attccaaccactcctcgtcctccatgtccactgtacccctcctcctctcctacatcctcg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 attccaaccactcctcgtcctccatgtccactgtacccctcctcctctcctacatcctcg 708
Query: 523 gcttttgtacagcatctgatcgctaacagggccctaaattagtcatcagggccagaagct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gcttttgtacagcatctgatcgctaacagggccctaaattagtcatcagggccagaagct 648
Query: 583 gggtgctggtttcaggtttgcccct 607
|||||||||||||||||||||||||
Sbjct: 647 gggtgctggtttcaggtttgcccct 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1005
Length adjustment: 10
Effective length of query: 597
Effective length of database: 995
Effective search space: 594015
Effective search space used: 594015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_n17.g1 MSMg01no065_n17.g1 CHROMAT_FILE:
MSMg01no065_n17.g1 PHD_FILE: MSMg01no065_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:29 2005
(547 letters)
>mm_chr16_38232831_38233780
Length = 950
Score = 977 bits (505), Expect = 0.0
Identities = 539/551 (97%), Gaps = 5/551 (0%)
Strand = Plus / Plus
Query: 1 tttgtgttgctgcttctggaaaaccaaacatctttacttcctggatagagtcctaaaatc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tttgtgttgctgcttctggaaaaccaaacatctttacttcctggatagagtcctaaaacc 260
Query: 61 ctatcagcattatcttgggaaaatataattagttcttgctacagaaactttgactaataa 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatcagtattatcttgggaaaatataattagttcttgctacagaaactttgactaataa 320
Query: 121 attttgtagtcac-atgtctcaccttttttgaaaat-agttgtgatagtgtatctgttac 178
||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 321 attttgtagtcacaatgtctcaccttttttgaaaatga-ttgtgatagtgtatctgttac 379
Query: 179 atgaatgacattaatgtattttcattacgtatttcttctcctgtatttagtattcaggta 238
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 atgaatgacattaatgtattttcattacttatttcttctcctgtatttagtattcaggta 439
Query: 239 gccactgcaggtgcagtggttaaaattcactggaaaatgttatagtataaaggcattaga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gccactgcaggtgcagtggttaaaattcactggaaaatgttatagtataaaggcattaga 499
Query: 299 gttcaaactttaaagtcattaatcccagcttagggctttaacttcccagtacatttagta 358
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 500 gttcaaactttaaagtcattaatcccagcttagggctttaacttcctagtatatttagta 559
Query: 359 gaagaagaaaaagctactacattcagagacaggaatcacatatataacaacaaaggctct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaagaagaaaaagctactacattcagagacaggaatcacatatataacaacaaaggctct 619
Query: 419 aggaacagatttcataaactggacagtcagtcttctggagatgacgtgagtgaagtgttt 478
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 aggaacagatttcataaactggacagtcagtcttctggagatgacatgagtgaagtgttt 679
Query: 479 tgtttttaaagtagagagtgtcagtgttgaacttctc--cccaaaacatctctagtattt 536
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 680 tgtttttaaagtagagagtgtcagcgttgaacttctctccccaaaacatctctagtattt 739
Query: 537 ttttaaataca 547
|||||||||||
Sbjct: 740 ttttaaataca 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 950
Length adjustment: 10
Effective length of query: 537
Effective length of database: 940
Effective search space: 504780
Effective search space used: 504780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
