BAC Information

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BAC

Clone NameMSMg01-066L24
Chromosome16 (Build37)
Map Location 25,557,855 - 25,558,122
singlet/doubletsinglet
Overlap genenone
Upstream geneLpp, 5430420C16Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066L24.T7 (MSMg01no066_l24.b1)MSMg01-066L24.TJ (MSMg01no066_l24.g1)
ACCAG291649AG291650
length748750
length of high quality
(start - end)
---266 (133 - 398)
definitionCHROMAT_FILE: MSMg01no066_l24.b1 PHD_FILE: MSMg01no066_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:39 2005CHROMAT_FILE: MSMg01no066_l24.g1 PHD_FILE: MSMg01no066_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTTTTATTAAGAAAACCCTCCCCCTTTCCCCTCCCTTTTCCNTTTTC
TAATTTTTTCGATGAAGGGGTAGCCCGGNGNCGCCTGGCCTTCCCTATGC
GGGAACNANAGAAGGTTTGCAACAGCAACCNNAAACAGGAAGGGACGGCT
NNGNGAAGCCACCACAAGAGAGCTCCGGAGAGGCAACCACAAAAACCCAG
GAAGGAACCACNAGAAGAAAAGAGGGGGGAGGGAAGCCCGGAGGGGACGC
GGAGAAAAACAGCCACCGAGGGGCCAAAGCAAGGCGCAGGCAGGGCACCA
GAACTTGGCTAAAAGGACCACCGGGCACCACTCGGCATCGGGAGCAAGCG
GAAACCACAAAACCAAAAGACTGTTTTTTTTTATCAGGAAGAGGCTAAGG
ACATGAGAGTTCTTCTTCGTGTACCCACACTTCCTCTGCCATCACTTACT
GCCTCCTATTCCTGTTTGAATTTCCCCTGCTTTGCATTTGGATTCAACGA
GGACTAGGTGATATCTGAAAATGACTTTCTTCTGCACCCCAAAAATCACG
TATGAGGTTTAGCGATGTAAGCAGGCTGAAGCTATTGGTGTGACCCTTGG
CGGACGCTTTACCAGGGTATACTTTGGGGCAGGAGTAGAAGGACCTGGAG
ACGTCAGGAGAGGCGAGGAGTCTACTGTACTCACTAATAACGACAGACTT
CGAGGAGGGCCCCTGGCCCACTCCGTTCAAAAAACGCCGCTAAGACCC
CAAAAACAAAAAAAACAANNAAAAAAACACACAAAAAAACAANCACCAAA
ATTTATCGTCAATCTATATTTGCGGCGCTAAACGACTCCTATAGTTCGAA
ATCCGCGGAATTATATTTTCTCTTCGATAGAATTATCCCTGGACTATGTC
CAGTAAGTGCCCGTGGCTCAATGTTTTGTAAATAAGTCCTCATGAATATG
CAGTCAAAATTAGCCAAGCTGGACACCACTTTGCCTGGCCTTGCTTTAGC
AGTGTGCTTTTTCATAAATGTGCTGTTTCTATGGATTTACATAACACGCT
TCAGGATGGTTTGCGTACATTCAGTGGAAATGTCACAGGAAGTTGAACAT
TAAAGAAAGTGCAAAACAATGTGTGTTGGTTTTTTTTTTTTCCCTGCAAA
GGTAAGTGTATAAAATATCTGTTTTCTTCCCAGCTACTTAACATTATTCT
ACAGACACACCTGGAATAATATGTAACCTAAGTTTCTGTACTCCTGGGTG
CTCTGCGTGCTCACTACTTAGATAGATCAAGGTTTATCTGTTTCTGATTA
CGTTTCCCGTACTCGTTCTATATCTATGGAATCTACTATATGCACCTATC
TGATTCACCTAAATGTGTAATATACCTAAGAATCTGTTTTTAAATCTCTT
ATAGGCTTATGAAAGCGACTCACAATAATTTTCTCTTCCCCTATACGAGT
CTTGACTAAATATTTAATTTTTCCACTATTACTTATTCTCTTTTTCCTTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_l24.g1 MSMg01no066_l24.g1 CHROMAT_FILE:
MSMg01no066_l24.g1 PHD_FILE: MSMg01no066_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:39 2005
         (266 letters)



>mm_chr16_25557664_25558329
          Length = 666

 Score =  491 bits (254), Expect = e-143
 Identities = 264/268 (98%), Gaps = 2/268 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatccctggactatgtccagtaagtgcccgtggctcaatgttttgtaaataagtcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttatccctggactatgtccagtaagtgcccgtggctcaatgttttgtaaataagtcctca 400

                                                                       
Query: 61  tgaatatgcagtcaaaattagccaagctggacaccactttgcctggccttgctttagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgaatatgcagtcaaaattagccaagctggacaccactttgcctggccttgctttagcag 340

                                                                       
Query: 121 tgtgctttttcataaatgtgctgtttctatggatttacataacacgcttcaggatggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtgctttttcataaatgtgctgtttctatggatttacataacacgcttcaggatggttt 280

                                                                       
Query: 181 gcgtacattcagtggaaatgtcacaggaagttgaacattaaagaaagtgcaaaacaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcgtacattcagtggaaatgtcacaggaagttgaacattaaagaaagtgcaaaacaatgt 220

                                       
Query: 241 gtgttggtttttttttttt--ccctgca 266
           | |||| ||||||||||||  |||||||
Sbjct: 219 gggttgtttttttttttttttccctgca 192


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)