BAC Information

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BAC

Clone NameMSMg01-066N10
Chromosome16 (Build37)
Map Location 15,684,449 - 15,684,631
singlet/doubletsinglet
Overlap genePrkdc
Upstream geneSnai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4
Downstream gene2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066N10.T7 (MSMg01no066_n10.b1)MSMg01-066N10.TJ (MSMg01no066_n10.g1)
ACCAG291717AG291718
length747755
length of high quality
(start - end)
395 (144 - 538)198 (108 - 305)
definitionCHROMAT_FILE: MSMg01no066_n10.b1 PHD_FILE: MSMg01no066_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:46 2005CHROMAT_FILE: MSMg01no066_n10.g1 PHD_FILE: MSMg01no066_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTTTCTTTTTTTTCTCTTTCCTCTCTTCCTCCCCCTCTTCCCTCCA
CTCCCTTTTCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCATAGA
CCTAACTTGCACTCCCTTTTCCCTCTGGCCCCCAAACTTTAAGAAGCATC
AAGCCAACACCTCCATTTCATCATCTGGTTTATCTAATCGATTTGCCAAT
TTAGAGGCTAACATGGAGAATGCTAACCACATCTCCCTTTCTTGTTGCAA
TTGCTTCGTTACATAAACAAGCTCCTGCTTAGCAGCCCTCTCAGCCTCAT
ACGCATTCCTAAACACAACATCAGCAACTACTGCTACTGCTTCTGCTTCT
GCTTCTCAACCTTTTTGTGCTAATCTTAAGGACTGCAAATTTTCCTCTGA
ATGTTTAACTGTTTTCAGGGCATCTCAATGTTTGCTTGGCAGACTCCATT
CATCCAGCAGGTTTGCCACCCCATACAACACAGATGAAGACTGACATCCT
GGGACTCCTCCAACAGACACTCCTATTCCTGATGGCTCAACCTTAGTTGT
CCGTTTCACCACCCTTAGCAAGTGCTGCCTCAGTATGAATGCACACTACC
CCACGCCCCACTGGTATAAGACTAGTCTATGGGACTTTTTCTCCCCAGAA
TGCTCCCTACCTCGGCATTCTCAGCCTCTTTTGTCTCTCTTGCCACA
NNNCCCCNCCCCCCCCCCCCCCTCTCCNCCCCNCCCNCCTCCCCCTCTAC
ACCACATAACTTCTAAATTGCGGCGCTAAACGACTCCTATATCCAGAGAA
GCGCGGAATTCAGCCTGTTGCCCACACATCGGGAAGGACGCATCAGTTCA
GCCCCATCCTGCTGAATGTGAACCACAACTCCCTTCGCTGTGCAAAGCAG
GGACAGCAAAGCAGGGACAGCGAAGAAAGCACAACCAAGACAGGAAGCCA
AACAGCTAATGTCAGGTGCTTTCATTGCTGAAAAGATACCAAAATTATTT
CTAGGCCATACTCTAAATTTGTATGCAAAACAACTAACATTTAAATGAAG
GCTTTTAAATTGTCACAAGTAAATCTCTGATTCACTTAACGCAAAGAATA
ATGAAAGGATTTCTTCATGGCGAACTGTTTCCTGTCCTTTTCAGATGCCT
CACTACATGCCCACTAAACCCCTTTCCGGGTAGTTCGAGAAAGCGTATAT
TATTCTCAGTGGCTCTTGCACTCATCTGTGGTCAGTCTACCATTAATTAT
TTCTCTATGCCATTCTTATTCCTTCTTATGAAATATCAACTCTGACCCCC
TGTCTATTTAAACATAAGATATCTATACACTAAATTACGGGAACACCTTA
TAAGTCTCTTCTGGACCTTGTTTTAAACTACCCTTAATAGTTCAGTCCAT
TACTGAGCCAATAATTATTTAATCCTTTCCTTCTCCCACATCTTAGTTTT
TTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_n10.g1 MSMg01no066_n10.g1 CHROMAT_FILE:
MSMg01no066_n10.g1 PHD_FILE: MSMg01no066_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:46 2005
         (198 letters)



>mm_chr16_15684151_15684748
          Length = 598

 Score =  277 bits (143), Expect = 4e-79
 Identities = 177/197 (89%), Gaps = 14/197 (7%)
 Strand = Plus / Minus

                                                                       
Query: 2   ttcagcctgttgcccacacatcgggaaggacgcatcagttcagccccatcctgctgaatg 61
           ||||||||| ||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 481 ttcagcctggtgcgcacacatcgggaaggacgcatcagttcagccccatcatactgaatg 422

                                                                       
Query: 62  tgaaccacaactcccttcgctgtgcaaagcagggacagcaaagcagggacagcgaagaaa 121
           |||||||||||||||||||||||              |||||||||||||||||||||||
Sbjct: 421 tgaaccacaactcccttcgctgt--------------gcaaagcagggacagcgaagaaa 376

                                                                       
Query: 122 gcacaaccaagacaggaagccaaacagctaatgtcaggtgctttcattgctgaaaagata 181
           |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 375 gcacaaccaagacaggaagccaaatagttaatgtcaggtgctttcattgctgaaaagata 316

                            
Query: 182 ccaaaattatttctagg 198
           |||||||||||||||||
Sbjct: 315 ccaaaattatttctagg 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)