BAC Information

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BAC

Clone NameMSMg01-067G05
Chromosome16 (Build37)
Map Location 56,750,068 - 56,750,321
singlet/doubletsinglet
Overlap geneGpr128
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp, Tfg
Downstream geneTmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067G05.T7 (MSMg01no067_g05.b1)MSMg01-067G05.TJ (MSMg01no067_g05.g1)
ACCAG292134AG292135
length716737
length of high quality
(start - end)
256 (43 - 298)116 (127 - 242)
definitionCHROMAT_FILE: MSMg01no067_g05.b1 PHD_FILE: MSMg01no067_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:28 2005CHROMAT_FILE: MSMg01no067_g05.g1 PHD_FILE: MSMg01no067_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGAGCTGTTTCCTTTCTACTATCAGCAAGAGCAGCAATTAGGACAGCT
GCAATGGAAAGAGGTTCAGGCCATCCAAGTGGCCTACATATGGCCAGGTA
TGTACTAAAGCGTTCCACTCCATAAGGATCTCACTCTTAACACAGTTTGT
CTAGGGGAATGTGCCAACTTCTTCCCACATATGCATCTTTTCAATGCTTA
CAAACACAGTGCTAAACTAAACTTGTCTGTCTGTCCTGAAACCCCATGTT
AAACAACAACCAAGACCTCTGTTACTTTCGAGCATGCTCCTTTTTATCCC
TATCGCTTTATTTTCTTTCCTACTCCCACCCGAATTTTAAATCTATGGTA
ATAATACCTCAACGGTGTCCTTGGATGATGTATCCTATACCTGTGTATAA
GGGAAAGCCTTGCCTCCANNGAGATTGATTGTTTACGGCCAAGCTTACCC
ACCNCGACAGCGCAACTGGCCGTGGGGGCTGGAATCTGCTTTGTGTGGAT
TTTTTTGGCGCCCCCCCCGTTTCTCGGCCCCCCTTGTGAGTCCCTACCCT
TCTTCTTATCCCTTTCTGTGAAATCCCTTTTTTGTGGTGAACCTGCTGCC
CCCCCCATTGCCATATGGCAATCATGACGACCCCTTTACCGGATGTACCG
GATAATGTGATNCCCG
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTATTCAACATTCAAA
TTCACTTCTATTAGAGACACCCCAACTAATTAGGCATTACAGTTTATTTG
TATAGCGCTAGAAAAGCTTGGGGCTAGTCTACATAGTAATTACTTAGGAT
AATAGCTGAGTCACACCCATACACAGGAATACACAATGGCCTAGGAAATA
GGCGGATTGTAGTACGAAAGCGTTAATAGAAGGGAATTCCCCTGGAGCAG
GTTTTTTCACTAGGCCTATATGATTAGCATAATCAAGTATTTACCCTGTT
GGTATGTTTTTTTTTACCCCCCCCCCGCCCCAGATCTTTTACCTGAGTTC
CTGTGTTTAGCTGAATCTATATAAAAAGAAAGAAACTATTCTCAGCGGGG
GGTATGGTCCTGTTTCACTCCCACCACTTTATGTATGCTTCTTTCCTCAT
TTGTGTTTTTGTACCCTCGCATGAATGTGTCACTCTGGCCTCTCAGAGTT
TCTTTTCTCTTCGCTCCATTTATCCGGCCGTTTTTTTTGTATCCCAATAA
CTTCCCGATTTTCTTTTTTTCTTTTTTCCCTGCCCGACCATTTTTCACTT
ACTTTCATATCCAACCTCTTTAGTTCAACATGACACGAAATTCCCCCAAC
TCCCCCTTCTTATCCCTACCACGCCCCACTCGACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_g05.b1 MSMg01no067_g05.b1 CHROMAT_FILE:
MSMg01no067_g05.b1 PHD_FILE: MSMg01no067_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:28 2005
         (256 letters)



>mm_chr16_56749864_56750521
          Length = 658

 Score =  445 bits (230), Expect = e-129
 Identities = 248/254 (97%), Gaps = 2/254 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattca-gagctgtttcctttctac-tatcagcaagagcagcaattaggacagctgcaa 62
           ||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagagctgtttcttttctacatatcagcaagagcagcaattaggacagctgcaa 264

                                                                       
Query: 63  tggaaagaggttcaggccatccaagtggcctacatatggccaggtatgtactaaagcgtt 122
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggaaagaggttcaggaaatccaagtggcctacatatggccaggtatgtactaaagcgtt 324

                                                                       
Query: 123 ccactccataaggatctcactcttaacacagtttgtctaggggaatgtgccaacttcttc 182
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 ccactccataaggatctcactcttaacacagtttgtctagtggaatgtgccaacttcttc 384

                                                                       
Query: 183 ccacatatgcatcttttcaatgcttacaaacacagtgctaaactaaacttgtctgtctgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacatatgcatcttttcaatgcttacaaacacagtgctaaactaaacttgtctgtctgt 444

                         
Query: 243 cctgaaaccccatg 256
           ||||||||||||||
Sbjct: 445 cctgaaaccccatg 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 658
Length adjustment: 9
Effective length of query: 247
Effective length of database: 649
Effective search space:   160303
Effective search space used:   160303
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)