BAC Information

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BAC

Clone NameMSMg01-068G15
Chromosome16 (Build37)
Map Location 85,641,068 - 85,641,350
singlet/doubletsinglet
Overlap geneLOC622000
Upstream geneLOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994
Downstream geneAdamts1, Adamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068G15.T7 (MSMg01no068_g15.b1)MSMg01-068G15.TJ (MSMg01no068_g15.g1)
ACCAG292914AG292915
length664674
length of high quality
(start - end)
315 (44 - 358)283 (81 - 363)
definitionCHROMAT_FILE: MSMg01no068_g15.b1 PHD_FILE: MSMg01no068_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:50 2005CHROMAT_FILE: MSMg01no068_g15.g1 PHD_FILE: MSMg01no068_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCCA
GGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGC
GTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATT
CTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAG
TTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCA
GCAGGCGTGGGAGATATTTTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAG
TCTCTGTTTTTTTGCTCTCCCCTCTCCCGGAAGGTGTACAGTTATCTGGT
GTTTGGACCTCCTCCTGACTGAAAATGAATTCCCTTAACGGGATCTTTCC
CAGAAGCTGCGTTGCTTTGGTCAGGAAGGTGGCCAGTTGTCTGGAGTCTA
ATATGTTGCAGCCTCATAAGCTCTGTGGTTCTTGCCGGTAAGGTGGCTGG
TTGTCTGGAGCTGATGATGTTGCCGCCCCATAATTTCTGCGACTCTCTCG
CCCGTCCCATTATCTTTTGGCATTCTGTATTCCACACGGTCATTCTTGTT
TCCTGCCCTCCGCG
NAAACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGTCAGAGGAAAGAGAG
ATCCTTTTAAAGTAAACACCTTGACTAAAACACATTAGCATTCACTATCT
TGGCCCGAGCATCTACCACACAAAATGTCTGGAAGCTTTTAAGGAGGAAA
ATAGAACAAGAATAAAAATTATGGAGTGTGCAGGAGGTTATACCAATTTA
TATGCATGGGATGCGAGGCATTTTCTAGAATGATTAATTTTGTTGTAGGT
GGGCAGTTGTGGCATAAACTGTATCATGAAAGCTGGAACAGCAATGAAGA
ATAATTAAAAGGTTTNGTATTGTTCCACANGCCTCCCCCATGTCTTCGCA
GTAAAGTGATGGATTTATCTGGCTGCAAACAAAAAAAAAATTTGATGGGG
GGGGGAGGACAAAACTATATTACAGCTGGTTTGAGGGAGACGTTAGGTTG
TACAAATTGATGGCTATGAAAATAAATTTTATTCGATAAAAATATCGATT
CCCTCCCTGTATAAAATACAGGCCTAACCCTTATATTATATTGTTGTCTA
GGACCTCATCCTGCTTTGTGTCCATTTGAATTCACACCTCCCCCTTTTTT
TACTTTACCCCTCTACTACCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_g15.g1 MSMg01no068_g15.g1 CHROMAT_FILE:
MSMg01no068_g15.g1 PHD_FILE: MSMg01no068_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:50 2005
         (283 letters)



>mm_chr16_85640868_85641550
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaggtcagaggaaagagagatccttttaaagtaaacaccttgactaaaacacattagca 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 taaggtcagaggaaagagagatccttttaaactaaacaccttgactaaaacacattagca 260

                                                                       
Query: 61  ttcactatcttggcccgagcatctaccacacaaaatgtctggaagcttttaaggaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcactatcttggcccgagcatctaccacacaaaatgtctggaagcttttaaggaggaaa 320

                                                                       
Query: 121 atagaacaagaataaaaattatggagtgtgcaggaggttataccaatttatatgcatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaacaagaataaaaattatggagtgtgcaggaggttataccaatttatatgcatggg 380

                                                                       
Query: 181 atgcgaggcattttctagaatgattaattttgttgtaggtgggcagttgtggcataaact 240
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcgagggattctctagaatgattaattttgttgtaggtgggcagttgtggcataaact 440

                                                      
Query: 241 gtatcatgaaagctggaacagcaatgaagaataattaaaaggt 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatcatgaaagctggaacagcaatgaagaataattaaaaggt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)