BAC Information

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BAC

Clone NameMSMg01-068O19
Chromosome16 (Build37)
Map Location 35,663,796 - 35,796,661
singlet/doubletdoublet
Overlap geneDirc2, Hspbap1
Upstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663
Downstream geneParp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068O19.T7 (MSMg01no068_o19.b1)MSMg01-068O19.TJ (MSMg01no068_o19.g1)
ACCAG293305AG293306
length720751
length of high quality
(start - end)
319 (46 - 364)251 (80 - 330)
definitionCHROMAT_FILE: MSMg01no068_o19.b1 PHD_FILE: MSMg01no068_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:31 2005CHROMAT_FILE: MSMg01no068_o19.g1 PHD_FILE: MSMg01no068_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,663,796 - 35,664,110)(35,796,412 - 35,796,661)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAAATGTCCCATCAAATGTTCCAGAAGTTTCAAATCTCAGCCC
AGGGCTGGCGCACTCCAATGCTGTTCTCTAAGTGTCACAGGGGACCACTC
ACTGCTGGCTTAGGTTGACACCTCTGTCAGACAGTCTGTATCTTGACCAG
AGGCATCCCTCTGGTAAGAGGCAGTGAGGACTGAGAACCGGAGCCTGGAC
TGCACTGAGAGGCCCTTCACAGGACTCTTGGCACAGGTCTTAGTCTTGCC
TTCAGGATGCACTCAAGGTGGCCCAGAAGGAAGACTCAAGACCATAGGAG
GCAGAGTCTGGCCTCTTTTTTTGTGCACCCCGCCCCTGCTCAAGATTCGT
TGGCTGAGAACTGCTTGAGAGTCTCTGCTGAAAAATAATGTATTCAGGAA
CGCGCGCGCGCGCGCACACACACACACTCACACACTCACATACATACACA
CCATCTGCTATAGCAACAAAAAGGATGTTAAGCTGTGGCATTATTAATTA
AAGATGATATCCAGTCTCCAAATGGAACTGTCTTTGTGCATATGTGTGCG
CACCCTCTTGGCTTGTTGTATTCCATCAGTGCATTGCTCTGAGGTAACAG
ATGGTTTCCCAAGATTGATGAAATTTTCTAAGTGGAATTTGATTTTAATA
TAGGCCCTCCTTTTTCTGGG
AAAGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGCGAAACTAAGAGTAAAT
AGATTTTGACAAAAATGTATGGAGCAGGAGGACTTCAAGATGCTGGGAAT
GGGAGCCACTTCTGATCCTTAGTGCACCAGTCTTCCCTTCACGGAACTCA
AGTCCAACCAACTGACTGAATGCTAAAGCCCCTGACTGAGCGTCTGGCCC
TGGGGAGAGGGAACAGGTCAGGTCGGTCAGTGTTGGCATTCACCACCAGC
AAACCTGCATTGCAGTCTTCAAAATCTGGTCTCATTAGAGGCCTGCATTT
CCTGTCACAGCAAATTCTGTACGTTATTCCCCCAACTGGCCCATGTGAAA
TTTCCATTTGAGAATTGCTGCTGGCCCCCCTCGAAAAAAGATAAAGTTTG
GGGGGAGGGGGATTGACAGATCTTTTCATTTACAGGATGATTTCTAAACA
GAGATCTTCACTGTGTGTCATAGCAAATTCACCTCAATGCGTTGCTCTGC
ACTCCCCTGGAGACATGCCTCCTCTTTTGCTTCTACCGCTTTCCCTGCTT
CTCTTTATGTATTTGGTTATCACACCCCTCCCTATACTTTGTCCATTCCA
TTTCTTCTTACTCATTGGACGAATCCTTGCCGGCTTCATCTTCTGTATTT
TCCTTCCCCCATATTGTTTACCTTATCGCCCCTATTAACTTATTCTATTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_o19.b1 MSMg01no068_o19.b1 CHROMAT_FILE:
MSMg01no068_o19.b1 PHD_FILE: MSMg01no068_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:31 2005
         (319 letters)



>mm_chr16_35663592_35664310
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcaaatgtcccatcaaatgttccagaagtttcaaatctcagcccagggctggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaaatgtcccatcaaatgttccagaagtttcaaatctcagcccagggctggc 264

                                                                       
Query: 65  gcactccaatgctgttctctaagtgtcacaggggaccactcactgctggcttaggttgac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcactccaatgctgttctctaagtgtcacaggggaccactcactgctggcttaggttgac 324

                                                                       
Query: 125 acctctgtcagacagtctgtatcttgaccagaggcatccctctggtaagaggcagtgagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acctctgtcagacagtctgtatcttgaccagaggcatccctctggtaagaggcagtgagg 384

                                                                       
Query: 185 actgagaaccggagcctggactgcactgagaggcccttcacaggactcttggcacaggtc 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgagaaccggagcctggactgtactgagaggcccttcacaggactcttggcacaggtc 444

                                                                       
Query: 245 ttagtcttgccttcaggatgcactcaaggtggcccagaaggaagactcaagaccatagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttagtcttgccttcaggatgcactcaaggtggcccagaaggaagactcaagaccatagga 504

                          
Query: 305 ggcagagtctggcct 319
           |||||||||||||||
Sbjct: 505 ggcagagtctggcct 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_o19.g1 MSMg01no068_o19.g1 CHROMAT_FILE:
MSMg01no068_o19.g1 PHD_FILE: MSMg01no068_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:31 2005
         (251 letters)



>mm_chr16_35796212_35796862
          Length = 651

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accgcgaaactaagagtaaatagattttgacaaaaatgtatggagcaggaggacttcaag 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 accgcaaaactaagagtaaatagattttgacaaaaatgtatggagcaggaggacttcaag 391

                                                                       
Query: 61  atgctgggaatgggagccacttctgatccttagtgcaccagtcttcccttcacggaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atgctgggaatgggagccacttctgatccttagtgcaccagtcttcccttcacggaactc 331

                                                                       
Query: 121 aagtccaaccaactgactgaatgctaaagcccctgactgagcgtctggccctggggagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aagtccaaccaactgactgaatgctaaagcccctgactgagcgtctggccctggggagag 271

                                                                       
Query: 181 ggaacaggtcaggtcggtcagtgttggcattcaccaccagcaaacctgcattgcagtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggaacaggtcaggtcggtcagtgttggcattcaccaccagcaaacctgcattgcagtctt 211

                     
Query: 241 caaaatctgg 250
           ||||||||||
Sbjct: 210 caaaatctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)