BAC Information

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BAC

Clone NameMSMg01-069M21
Chromosome16 (Build37)
Map Location 55,440,501 - 55,440,690
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M21.T7 (MSMg01no069_m21.b1)MSMg01-069M21.TJ (MSMg01no069_m21.g1)
ACCAG293976AG293977
length681699
length of high quality
(start - end)
187 (105 - 291)186 (121 - 306)
definitionCHROMAT_FILE: MSMg01no069_m21.b1 PHD_FILE: MSMg01no069_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:39 2005CHROMAT_FILE: MSMg01no069_m21.g1 PHD_FILE: MSMg01no069_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATACACTCCTATATTCGAAATACGCGGAGTTCTCCCTGATGACACAAAA
AGAGAGAGAAGCCCTGAAAAAATGTTCAACATCCTTAATCATCTTGTAAC
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCTTTTT
TTCCAGCAATACCTCTCCTGGGCATATATCCAGATTTAGCTCCTTTTCCC
CCCCCCCCCACATGNTCCACTATGTTCATAGCAGCCTTATTTCTCTTAGA
CAAAAAAAAAAAAGAACCCTGATGGCCCTCCCCAGAGTTATGGATACTGA
TTATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTATTAAGAAT
GAATTTATGAACTTCCTAGCCAAATGTCCGGGCCTTGGACGTCCTCCTCC
TGTGTGAGGTCACTCTTCTCCTTTGGGATTCGCACCACATGTTCCCTGCC
GATTACTGGACACTTACTCCATTCTCTCCCTTTTTCCTTTACCCTATTAG
CCAATTTCCCCAAATTCTCGTAACTCTCGAA
GCAGTGATAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGCAAAATCAGGCTCAACATGAACAGTTCTCAAAACTGATGCATCA
TCTATTTTAACCAAGAAAAAATAGGAAAAACAATAATTAGTTAAAAATAA
CACCCAAAGGGCATTACAATATGCCTTAAGAAAGAAATGTTTGAAGAAAC
TGGGTGAGAAATAAAAGTAACCCAGACTCTGGTGGTGGTTAGGAAACTCT
CACAAAAGACAGAGGGGGGAAAAAAACTAAGAAAAAATGAAGCAATTGAG
CATAACATTTTTTTTTAATGAAATTACATCATTAGAGAAATGAAGATTTT
TGTAGTTTCCCCCCCCCCCCCCAGACATTTTTAAAATACAGTCTTATGCT
ACCTCAGACTGAAAAAAAAAAAAAAAGAACCTGGGGGGAGTATGGATCCG
ACATTACATTATATAAAAATGTACTTGTGCATATCCCACTTTTATTGAGG
AAACGAGATCATACCCTTATTCTCATATCTGGATCATTGTCTATAACCCA
TTATGGGTATACCCCTTGGACGTCTTCTATCTTCTCCGCCCCCCTTGCTT
CATTTTTACAAGTACTTACTTTCCTTATTCCTATCTCTAGTCCCCTTCTT
TTTTTCTCCCTTTCTTTCTTATCGGCCCTTTCCCCCGTTTCCCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m21.g1 MSMg01no069_m21.g1 CHROMAT_FILE:
MSMg01no069_m21.g1 PHD_FILE: MSMg01no069_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:39 2005
         (186 letters)



>mm_chr16_55440301_55440890
          Length = 590

 Score =  344 bits (178), Expect = 2e-99
 Identities = 186/190 (97%), Gaps = 4/190 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataggaaaaacaataattagttaaaaataacacccaaagggcattacaatatgccttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataggaaaaacaataattagttaaaaataacacccaaagggcattacaatatgccttaag 260

                                                                       
Query: 61  aaagaaatgtttgaagaaactgggtgagaaataaaagtaacccagactctggtggtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaaatgtttgaagaaactgggtgagaaataaaagtaacccagactctggtggtggtt 320

                                                                       
Query: 121 aggaaactctcacaaaagacagaggggggaaaaaaa---ctaagaaaaaa-tgaagcaat 176
           ||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||
Sbjct: 321 aggaaactctcacaaaagacagaggggggaaaaaaaaaactaagaaaaaaatgaagcaat 380

                     
Query: 177 tgagcataac 186
           ||||||||||
Sbjct: 381 tgagcataac 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 590
Length adjustment: 8
Effective length of query: 178
Effective length of database: 582
Effective search space:   103596
Effective search space used:   103596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)