BAC Information

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BAC

Clone NameMSMg01-069P16
Chromosome16 (Build37)
Map Location 35,036,348 - 35,036,449
singlet/doubletsinglet
Overlap genePtplb
Upstream geneKalrn, Ropn1, Ccdc14, Mylk
Downstream geneAdcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069P16.T7 (MSMg01no069_p16.b1)MSMg01-069P16.TJ (MSMg01no069_p16.g1)
ACCAG294109AG294110
length769775
length of high quality
(start - end)
104 (213 - 316)115 (131 - 245)
definitionCHROMAT_FILE: MSMg01no069_p16.b1 PHD_FILE: MSMg01no069_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:53 2005CHROMAT_FILE: MSMg01no069_p16.g1 PHD_FILE: MSMg01no069_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTTCCTTTTTTTTTTTTTTCCATCTCTTTCCTTCTTCNCCACCATAT
CTCCTCTATAATTGCGGCGCTATACGACTCCTATTCAGATGAGACCGCGG
AATTCAGTCTGTCCTCTGACTTGAGAGCTTGGTGTCAGAGACACATAACT
GAGATCTGTATTTGCTGCACCGATCTACAGAAGTGGAAAATGACAAGGCA
GGTGTTGCAAGTCCCAGGTTCAGTCTCAGCACCCATAGTCCACTTACCTC
CCAACTGTTTTAACTCTAGCTCCAGATGAGCTATTGCCTGTACCAGCATC
TGTGGGCACCAGACTTGTTTGTGAAGACTAAATTATATACATGGATGCAA
AACACTTATACTCTGATTTTTTTTACAAATAATTCTTAAAAACAGAGAGC
ATGACAGTATTTTTACCCCCACCTTACCTGATTACAGACAAATAGCATAC
TTAACTGTTCTGCCACACTATATGTGACGCCCTGGTTTCAACTCTCAGCG
CCACTTAAAGGCAGTCGGCGAGGATATCGATTTAGAAAGTGCCGGCCAGA
CTATATGTTCTCAGCTGATGCTGTACCGCTGTGAGCTTGATATCTGCCTT
GTTCTGTATTACCACTATTTCTTTAGTATTTTTACTTTGTACCCCTTAGC
CAGCCACGATTCCTTCTCTTTCACAAACCCTTTTTCTCTCATTTTCCCCT
CTACTCATTTTTTGTTTTGTCCCATTGAACCCCATTCGCTTTGATTTATT
ACCCGTTTATCCGCCCCCA
TTTTTTTTTTTCTTTTTTTTTTTCCTTTTTTTCCCCCTTTTCTACCTAAA
TNATTTTCCATGAAGTGGGAGGCCTGGAGGCCGCCTGGTCCTCAAAGGGG
GGTGACCTATAGAATTTTCAACAAAAGTGAACTCTGAGCGCTGACGAGAA
GCTCTATGGGTAAAAGAACTTGTCCACAAGCACGAGGCCCTGGGCTTGGA
TCCCCAGAACCCACCCACGTAAAAGATGAGGCATGGCTGCACAGACACTC
CGAATCCCAGCGCCTGCTGGGGGTTGGGCAGAGAAGAGTCACTGGGGCTT
CAGGACCACCAGCCCAGCTCCTAGGCTCAGTGAGGGATCCTGATTTGGGT
AATTAAAACAGAGAGCCACTGGTTTTTGTACCCCATGTCCTCTTCTGGGT
CTGCTCCTGCACTTTTGTGCACATCCTCCCACCTGCTTGATGAACACACA
CACATACACACATTTTCTCCCCCCCCCACATACCGATAGAGATCGTTAGA
GAGAGAGAGAGAGAGAGAGATATAGAGAGAGTGAGAGAGAGAGAGAGAGA
GTGCCTGAAGGCCACCCATTATATAAACGATTTTTAACACAGTTCTAGCG
AGTCTCTTTGTGGCCCCTCGGTATTGAGATGTCGATTAAGACCTTAAATA
CCCATAATCCCGCTTTTTTTCGCCCACCTACAGTAATTTCCATTTGCCCT
TTCCCTCTTATTTTTTCAAAAATCCACTAGTATACTCTAACCATGTTTTG
TTTTTTTTTTTATTTCCCCCCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_p16.b1 MSMg01no069_p16.b1 CHROMAT_FILE:
MSMg01no069_p16.b1 PHD_FILE: MSMg01no069_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:53 2005
         (104 letters)



>mm_chr16_35036148_35036651
          Length = 504

 Score =  174 bits (90), Expect = 1e-48
 Identities = 99/102 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaggttcagtctcagcacccatagtccacttacctcccaactgttttaactctagctc 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 201 cccaggttcagtctcagcacccatagcccacttacctcccaactgttttaactccagctc 260

                                                     
Query: 61  cagatgagctattgcctgtaccagcatctgtgggcaccagac 102
           |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cagatgagctgttgcctgtaccagcatctgtgggcaccagac 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 104
Length of database: 504
Length adjustment: 8
Effective length of query: 96
Effective length of database: 496
Effective search space:    47616
Effective search space used:    47616
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)